result

Gene information

Detail information of AfisC6G06903

Location

Gene	Chr	Start	End	Strand
AfisC6G06903	chr6	1194467925	1194470505	-

Sequences

CDS

Protein

Gene

>AfisC6G06903
TCCATCTCCTAAAATACCTTAAAATATAAATAAACCTTCTGGGATCGTTTAGAGTGTAGAAATGAATGAACAGGATGAACAATTAATAATTTCACATCATAACTACCGTTAGATCAGGACACCTCTATATTCCTTAAGCTCCTCTTATATATTCCTCACTCATACAGTTCGAATATTATGTTCTTCCTCTGCTTAATTTCATTACAGATAAAAATGGCAAGGCATTCTTGCTGCTACAAACAGAAGCTTAGAAAAGGATTGTGGTCACCTGATGAAGACGAAAAGCTTCTGAATCACATTAATAAATATGGCCATGGATGTTGGAGCACTGTACCTAAACAAGCAGGTAACCTTATATTATCATACTATATGATTATCCATTAACTTTGTTGAATATTATTGAATTGTAATGAAATTGTTATGATATGATCAGGTTTGCAGAGATGTGGGAAGAGCTGCAGGCTTAGATGGATCAATTATTTAAGGCCTGACCTTAAAAGAGGTACATTCTCATTGGAAGAAGAGACTCTTATAATCCAACTTCATGCAGTTTTGGGCAACAGGTATATATTGCATATGATATATAATCCCCTTGTTTACATCTTTTTGTGGACAAATTTTATGTATAATCCCATACAATAGGCTTGAATACAAACTTATTATAGAAATATGGAATTTTAAAATTTGTTCTTGCGCAGGTTTAAAAGTGTGCATACTTGACTTTGATTTTAGTTGAAATCGCGCACGCCTTTTTTTTTTTTTTTAATGAGCATATATATAGAATTTGTCCCTTTTTCTCTTCATATTATGGCTATTATATTCAAAAAACAGATGGTCCCAAATAGCAGCACAGCTACCTGGAAGAACTGACAATGAAATAAAGAACTTGTGGAATTCCAGCTTAAAAAAGAAATTACAAAAGAGAGGAATTGACCCAAACACCCACAAACCCATTAACGCAATTGATCATATCAACTGTATGGAATCTACACGAAGTTTTGATACTTCAATCTCCTATTCTCCGTCTGAAAATTCATCAGTATCGAAACCTAAACAAGTCTTCACCGGTCAATTCACGACTAATACGAATTTTATGAGTTATTTACCATTTAATATGGAGCACTGGTCCTCTCCTGAATCGGAAACTACATTGAATCATCATAATAATTGTGAGTTTATATACGGAATGGATGATATTTTTATGCAAAGCGATAGATTCTCCTGTTGGAATTCGATGCAACAAGCAAATTCAGAAGCACAAACGCAGTATAAAGTGGAGGATGAGGAACTCAGGTTGTCTGAATATATAGACGGTGCACTTCAAAATCTGACTGAATCTTTGTGTGAGTATTGATATCATTGATACAAATTTTATGAATGAATAACGTTCCAGGAATTTTAGATGAACTGTTAGTGTGGAGTGTTTGTTGCATTTATGCTGTATGAACCGATATTTATACACATGTAATTAGTGCGTGAATAATGATTGATCAAATGATATATGCTCAGAGAATGACTGTAAAATTTGCAGACTGTAAGTGATATATATGATCATAGAGTGACTGAAATTTGCAGACAGTAAGTGATAATAGCTATGTGAATTGCATGTTCTTTTTCTTCGACATGGTTATGATAGAAATAATAATAGAAAACCCATGAAACGTAACCGAGGAATTTGATGATGTCATTGCATACGTAGGTGCTACTCGTGTGAAGATTACTGGACTGGGGGGCCTGTGTAGGTTTCATAATGCGTACGTCTAAATTGAATGAACATTTGTGCGTAGAGGTCTGAAGCTACAACGACTGACCATAAATTGATGGCCGCACTCTCACACATACTATATACATTTAAGAGATTTGTATCAAAAGCCAAGCAAATGCTGTGCACATGGTAACCCTGAATCAAGTTTCAAAATAAAAATTTGGAAAATTTTAATGGCCGCCAGTGACCTGATTTCCAAGGACTCTTCCGCCACTTTTTCCAATCCACCGCAACTCTTAACCCTCTTCCATTCTCTAATCTTAAGGGGAAACCTCCGGGGATCTAGACGATGAGGAGTTCGAGCTTGTTAGGAACCGATGTAGAAACTCGTTTCGCCCTGTTAATATCCAAGATGCTGGAAGAATTCAGCCGCAGTTAATCAAAAATAGCCAGAAAGACTCAAGAAATGCAAGAACTAAGACGGCTAATTCATACGTAAACCCACAATCTCCGCCACAGGCCGTAGATGATCTTCAAGCTAAAAAGTCATCTTTCTAGGTAGATAGGATTCAATTTCAATTTTGATTTAGACTAGGTTACTCCTATCACCATTAGCAATAAAATAAGTGATGCCAGTGAAAAAGGGGGTCAGCAAGAGGACTGACACCAAATGAGGCAACTTAGTTATTGCTTAGGTATTTAACAATCACCCTTAAAATCATCATTTCAAGGTTTTTGTTTCAAGCGCTTGGAACCCGACATGTAGTTTTGAGATCTACACAAGAAACGATGGTTTTTTTATCATAAAATTTGCAAACGTGAGTGACTGTGAAAAGGCCATAAATGGTGGACCTTACTTTATTAATGGAAAACACA

Functional annotation

Database	accession number	e-value	annotation
nr	KAE8685162.1	5.5e-69	Transcription factor MYB32
Swissprot	Q8VZQ2.1	7.2e-66	Myb-related protein 61
trEMBL	A0A6A2Z281	4.0e-69	Transcription factor MYB32

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G09540.1	83.46	2e-67	252	ATMYB61;MYB61	myb domain protein 61

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06903	AT1G09540.1	133	22	13	145	1	133	83.46	2e-67	252
AfisC6G06903	AT4G01680.1	133	20	13	145	1	133	84.96	1e-65	246
AfisC6G06903	AT4G01680.3	133	20	13	145	1	133	84.96	2e-65	245

Ortholog group

Species	Genes
Allium cepa	g236158.t1
Allium fistulosum	AfisC6G06903
Allium sativum	Asa0G04120.1; Asa8G00928.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	26	73	56.4	2.1e-15
PF00249.28	Myb_DNA-binding	Domain	79	122	48.6	6e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009901	P	anther dehiscence
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network