result

Gene information

Detail information of AfisC6G06930

Location

Gene	Chr	Start	End	Strand
AfisC6G06930	chr6	1199590705	1199592966	+

Sequences

CDS

Protein

Gene

>AfisC6G06930
ATGGAATACCAACGTGTTGGCAATCAAAACTCATGTTTACTGATAATATTTCTCATCTCATCCATGATAGTTAACTATGGTGAAGCTGCAAGAATTGTACAACATAAGACTTTGAACAGTACAGCATTACCTCGGACCTGGACATGGAAGGCGACAAAAGAGGCTGAGGAGGTGGCTGCTATAAACTGTTCTAGGCAAGGAAGAGCTTATTTAGATGGAATAGTAGTTGATGGTAATGGTACTGCCCCAACCTGCGACTGTAATACTTGCTACAGTGGCTCCGACTGCTCTACATTGCTTCCAAATTGCTCTGCAGATGTCATAAGGTATAAATCTGAATTATATAATTATATTGCTTTTCGTAATATATATACACCTACATAGAATATAGAATCAAATCCTATTGCAAATTAACTTACAAACAGATCTTTCCATCCAACATATACTTGTTGCCCGAATATAATTATATGTCATATGAACCTATCTTAACTACTAAGTTTCCTCATAACACATGTTTTTTGTTCGCATAATACATCAAATTGTATTAATTAGATTAGTTTTTACTATAAATTCTAATTTGTACACAGTGGGGACGCTTTGTTTCTAGAAGAATATTGGATGCAGCACAAAGAAAATTCGGTAGTGTTACTATCGGGATGGCATCGAATGAGCTACTATTTCGCTCCAGGCAGCTTCATATCCATCATGCTTAAAAGGTATATTAAACTGTTACATGAGGCTGTTGGTAACGCTAAAACTGATGATAAATACATCATGTTTGGGACTGGGGTGACTCAACTTCTCAATGGATTGGTCATCCACTTCTCAATGGATGCAATTTAAAAGTAAATTAGAGTATGTAACCTGAACTCAGTTACCTAGGGATTATAAACATTATTTCGATTCTACCTACAGTTTGCACATGAGTATACCACTTGGTTATTGTATGCCCACCAAACATTATATTGGAATTCATACAACAGAACTAATAGGCTCTCTCTAAAACTAGTTCATCCATGTACAATTTTACAAATGATGAACATATGGATAACCATTTCAGAAGATAAATACTAATCTGAATAGTTTAGGAATAATATTATTTTTCCTATGTTGTACAGGTGTTTAGGACTCAAACCGCATTTTTTGATTTTAGAGGATATGAATGGAAAGGAGATGCTTCAAATTATGTAAATACAACCACTCCACAAAATTTCATTGAAATGGTGACTTCACCAAATAATCCTGAAGGTCGTCTACGACATTCAATAATAAATGGCTCTTTGGCCATTTATGATCATGTTTACTATTGGCCTCAATATACAGCAATCAAATATCCCTCAAACGAAGATGTAATGTTATTTTCTATGTCCAAGTTCACCGGACACTCTGGAAGTCCCTTCGGGTATGTTTATTGGTACATTAGTTTTGCATTATTGCCTTCACTAAATATTTCAAATAGAGTTTGGTTCAGGGTTTTAAAGCACCTTTAATCAATAGTATTGTCAGTGAAGGAAAGACATCCGGTTAATTAATGTTTTTCATATGTAATTGAAACACTGACTCAAACAGTGCATAATCTGTATGACCTTGATTTGTATCTATACTCGACTCTTAGGCATTTAAGAACCATTTTGAGAATATTATACTACATATGAACAATTGAAAGGATATATTCATTTAATCCTAATATACATCATAATATTTACATTTATATGTAGGTGGGCGCTGATCAAGGATGAGAAAGTGTACAATAAATTAACAGATTATGTAACACGTACTTCCTAGGGGACATCCCACGACACACAACTTCGAACTGTAAAACTCATAAAGGAAGTTTTATCACAAATAAATACAAATAAGGGTACCAGGAATGACATCAATGAATTTGGTTACCAGACTTTGAGAAAAAGATGGATTGAACTAAATAATCTGATATCATCCTTTGACCGATTCACCCTACAAAAGCTCTCTCCTGAATGTTGCAATTACTTTAAGAAAGTTAGAGATCCCTCCCCATGTAAGTATATGAATTACATATGTTTAGTTGTATCCAAATGTTTAGATGAACTATACAAATGTTTAGTTGAATCACCTCATCAACTTCTTTTCACAACTGCAATCAAGAACGAGTTGCCTGCAATTGAACTGCCTGCAATCGAGAATGGCATCCAAATTCGCCACCTTCGAATGCCAACTGTCCCACAGCAACCAGCCTCTCCTCCCCTCGCCTGCCAACCTCAATCGCGCCTCACCCCTCGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD06448.1	3.0e-123	alliinase-like
Swissprot	P31757.2	1.6e-97	Cysteine sulphoxide lyase
trEMBL	Q76BK3	2.2e-123	Alliinase-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	40.84	4e-68	255		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06930	AT1G34060.1	311	150	5	16	296	6	312	40.84	4e-68	255
AfisC6G06930	AT1G34040.1	312	148	8	16	297	6	311	41.03	3e-59	226
AfisC6G06930	AT1G23320.1	259	133	6	92	321	13	265	35.14	5e-37	151

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	46	103	83.2	1.1e-23
PF04864.10	Alliinase_C	Domain	185	299	185.4	1.2e-54

Gene Ontology

Accession	Ontology	Name
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009888	P	tissue development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009851	P	auxin biosynthetic process
GO:0009908	P	flower development
GO:0016846	F	carbon-sulfur lyase activity
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network