Detail information of AfisC7G00219


Location
GeneChrStartEndStrand
AfisC7G00219chr73902485439032467-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020243649.18.3e-259uncharacterized protein LOC109821903, partial
SwissprotF4IXE7.11.9e-74Repressor of silencing 4
trEMBLA0A5P1FI242.0e-230PHD-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G58610.143.091e-99 362PHD finger transcription factor, putative

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF05641.9AgenetDomain2610152.35.4e-14
PF16135.2JasFamily61067356.71.9e-15
PF00628.26PHDDomain72376429.16.2e-07

Gene Ontology
AccessionOntologyName
GO:0000790Cnuclear chromatin
GO:0000792Cheterochromatin
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980FRNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0001221Ftranscription cofactor binding
GO:0016020Cmembrane
GO:0004003FATP-dependent DNA helicase activity
GO:0004402Fhistone acetyltransferase activity
GO:0004407Fhistone deacetylase activity
GO:0005737Ccytoplasm
GO:0005665CDNA-directed RNA polymerase II, core complex
GO:0005813Ccentrosome
GO:0008270Fzinc ion binding
GO:0008285Pnegative regulation of cell proliferation
GO:0009506Cplasmodesma
GO:0010385Fdouble-stranded methylated DNA binding
GO:0016581CNuRD complex
GO:0021895Pcerebral cortex neuron differentiation
GO:0031492Fnucleosomal DNA binding
GO:0032993Cprotein-DNA complex
GO:0035093Pspermatogenesis, exchange of chromosomal proteins
GO:0036091Ppositive regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0042826Fhistone deacetylase binding
GO:0043967Phistone H4 acetylation
GO:0043971Phistone H3-K18 acetylation
GO:0043972Phistone H3-K23 acetylation
GO:0044030Pregulation of DNA methylation
GO:0044154Phistone H3-K14 acetylation
GO:0045595Pregulation of cell differentiation
GO:0060850Pregulation of transcription involved in cell fate commitment
GO:0061628FH3K27me3 modified histone binding
GO:0080188PRNA-directed DNA methylation
GO:0098532Phistone H3-K27 trimethylation
GO:1901798Ppositive regulation of signal transduction by p53 class mediator

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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