result

Gene information

Detail information of AfisC7G00399

Location

Gene	Chr	Start	End	Strand
AfisC7G00399	chr7	77934130	77936771	-

Sequences

CDS

>AfisC7G00399
ATGAACGAATTTCACCCACATGAGCTATTTCAAAACAACATGTTCATGGTACCTGAGCAATTCATCCAGCAAGATCAGTTCATTACCTCAAATCCAAACATCATACAATCTTCAAACTCGATCTCCGAATCAGACGATGAAATGCTTTCGAACATGGCCCTCAACTACATAAACCAAATGCTAATGGCCGAAGACAACAAAATCTGCACCTATCACGACTACTCAGCTCTCGAAGCTACTCAAAATTCATTCTATGAAATCCTTAGAGAGAACAATCCATATCCCAATTCAGATCATAGTTCACCTGAAGCTGGTGTTAGCAGCAGCAGCAGCAGCAGTTACAATATAGATTTTTCAGAATCTGAAAAGGAAAGAAATGAAGGTTTGTTCTTTGCATCTCATAGCAGAAAGAACCGACACGATTATGATTTAGAATCAGAAGTTCAAAGAAGTGTAAAGCAACCCAATATATACACTGAAGAAACTGCAAGAACACCAATGTTTGATGACTTACTACTAAGCCATGGAGACAAAATCCCGAAAGCCATTATTGACATCCAAGATGCTTTGAATCATGTATCACTTAAAGGCAAGAAGAAGAAACGACCCAAGAAGGATTTCGTGGATCTTTGCACTCTACTGATCAACTGCTCTCATACAATATCATCCAATGATCAAACAACAACAGACCAAACGCTCAAACAAATAAGACAGCATTCTTCTCCTTCTGGAGATGGGACTCAGCGCCTTGCTCACTACTTTGCCGATGCCATTGAAGCTCGCTTGTCTGGCACTGGATCCGAGATATACAACTCATTCAACAGCACAAAAAGAACTGCTTCGGATTACCTAAAAGCTTACGGATTATACATAGCAGCTTCGCCGTTTAAGAAAGTATCATACTTCTTTTCCAATCAAACCATACACAACGCGTCCAAGAACGCAAGCTGCGTTCACATAGTTGATTTCGGAATCAATTTCGGGTTCCAGTGGCCGGCCTTCATCCAACGGATATCAAAACGGACCGGAGGCCCACCTAAGGTCCGGATTACCGGGATCGATTTCCCCCAGCCCGGGTTTCGGCCTGAGGAGAGGATTCTAGAAACCGGTCGTAGACTTGCTGATTACGCGAGAAGCTTTAACGTGCTGCTGGAATACAAACCGATTGCGTCGAAATGGGAGGATGTTAGGGTAGAAGACGTTGAAATTAGGAAAGGGGAAGTATTGGTTGTAAACTGTTTGTTCCTGGCCAGGTTTTTACTGGACGAGACGGTGGATGCGGAATGTCCAAGGAAAAAATTCCTGAGCGTGGTACGGAGAATGGATCCGGACGTGTTCGTGCACGGGATCGAGAACGGAGCGTACGGATCGCTGTTCTTCGTGACAAGATTCAGGGAGGCGGTGTACCATTTCTCAGCGCTGTACGACATGTTGGAGACGGTGGTGGGGAGGGAGAACGAGGAGAGGAAGCTGATAGAGAGGGAGATATTCGGGAGGGCGATTATGAACGTGATCTCGTGCGAAGGGAGGGAGAGGTGGGAGAGGCCGGAGACGTACAAGCAGTGGCAGGTGAGGATGGCGAGGGCTGGGTTCGTGAAGAATGGGTTGGATGAGGAGATGATGAGGAGGGGGAAGGAGAAGGGGAGGAGGAGCTATCATAAGGATTTTGATGTGGATGAGTGCGATGGGTGGATGCTGCTGGGTTGGAAAGGTCGTATTGTGTATGCCCTCTCTTCCTGGAGACCTGCTAAAAATTAA

Protein

Gene

>AfisC7G00399
TAAAAAATATTCATCAATTTACCATTTGAATTGCTTTGAACTTTATTGGTGTGAAAAGTTGGTATACCACACATCGCATTCAAGGTAACTGGAATGGACGTTTCTGTGGATTGTTAAGTTCAACTACCGGATTTGTGAAAATAAGTGTGTGGTCAATGACCGTAAAAACGCAGATTGTTATGATATACGGCGTCGCGAAGGTGTAATCTTTGTCAACTACATGTCTAAATGAATATACTTAATGCTTTTGTTGTTGATTCGATGCATACTTAACGTTAATGGAAGAAGCTTGGATCCTTAAAAAAATGGAGAAAAAAAAATTATATACAAAAATCAAATGTGTGGCTAATTTCCACCATGTAAATAGTAGGTTTAAAGTTTAAACAAGACACGATTCTCATGATATGTTCATTTTTACTGAAAAAGTTGCGAAACAGTACTTCCATACACTTAAGGGGTTTAATGAATATTTTCATTCAATTATTTAATCAAATAACTCTATGTTGGTTGGTCAGTTATTTATTTATGAAAGAAGTCAGAGCTACAAGGTGACAAGCAGAGCTCATAGATCACAACTTGTTTCTTTGCTCCTTTCATCTTCCAGGTACAATTCTTTACCTTAGTCTTCAATTCATCATTCATATCATCATTTGCTTAACCTCAGTTCTTGGATCTTTTTAATCCTCTTTCCCATCCACTTTTGGTTTCATTTGAAATGTTATAACCTTTCTTTCATGAAAGTGAAACAATGAACGAATTTCACCCACATGAGCTATTTCAAAACAACATGTTCATGGTACCTGAGCAATTCATCCAGCAAGATCAGTTCATTACCTCAAATCCAAACATCATACAATCTTCAAACTCGATCTCCGAATCAGACGATGAAATGCTTTCGAACATGGCCCTCAACTACATAAACCAAATGCTAATGGCCGAAGACAACAAAATCTGCACCTATCACGACTACTCAGCTCTCGAAGCTACTCAAAATTCATTCTATGAAATCCTTAGAGAGAACAATCCATATCCCAATTCAGATCATAGTTCACCTGAAGCTGGTGTTAGCAGCAGCAGCAGCAGCAGTTACAATATAGATTTTTCAGAATCTGAAAAGGAAAGAAATGAAGGTTTGTTCTTTGCATCTCATAGCAGAAAGAACCGACACGATTATGATTTAGAATCAGAAGTTCAAAGAAGTGTAAAGCAACCCAATATATACACTGAAGAAACTGCAAGAACACCAATGTTTGATGACTTACTACTAAGCCATGGAGACAAAATCCCGAAAGCCATTATTGACATCCAAGATGCTTTGAATCATGTATCACTTAAAGGCAAGAAGAAGAAACGACCCAAGAAGGATTTCGTGGATCTTTGCACTCTACTGATCAACTGCTCTCATACAATATCATCCAATGATCAAACAACAACAGACCAAACGCTCAAACAAATAAGACAGCATTCTTCTCCTTCTGGAGATGGGACTCAGCGCCTTGCTCACTACTTTGCCGATGCCATTGAAGCTCGCTTGTCTGGCACTGGATCCGAGATATACAACTCATTCAACAGCACAAAAAGAACTGCTTCGGATTACCTAAAAGCTTACGGATTATACATAGCAGCTTCGCCGTTTAAGAAAGTATCATACTTCTTTTCCAATCAAACCATACACAACGCGTCCAAGAACGCAAGCTGCGTTCACATAGTTGATTTCGGAATCAATTTCGGGTTCCAGTGGCCGGCCTTCATCCAACGGATATCAAAACGGACCGGAGGCCCACCTAAGGTCCGGATTACCGGGATCGATTTCCCCCAGCCCGGGTTTCGGCCTGAGGAGAGGATTCTAGAAACCGGTCGTAGACTTGCTGATTACGCGAGAAGCTTTAACGTGCTGCTGGAATACAAACCGATTGCGTCGAAATGGGAGGATGTTAGGGTAGAAGACGTTGAAATTAGGAAAGGGGAAGTATTGGTTGTAAACTGTTTGTTCCTGGCCAGGTTTTTACTGGACGAGACGGTGGATGCGGAATGTCCAAGGAAAAAATTCCTGAGCGTGGTACGGAGAATGGATCCGGACGTGTTCGTGCACGGGATCGAGAACGGAGCGTACGGATCGCTGTTCTTCGTGACAAGATTCAGGGAGGCGGTGTACCATTTCTCAGCGCTGTACGACATGTTGGAGACGGTGGTGGGGAGGGAGAACGAGGAGAGGAAGCTGATAGAGAGGGAGATATTCGGGAGGGCGATTATGAACGTGATCTCGTGCGAAGGGAGGGAGAGGTGGGAGAGGCCGGAGACGTACAAGCAGTGGCAGGTGAGGATGGCGAGGGCTGGGTTCGTGAAGAATGGGTTGGATGAGGAGATGATGAGGAGGGGGAAGGAGAAGGGGAGGAGGAGCTATCATAAGGATTTTGATGTGGATGAGTGCGATGGGTGGATGCTGCTGGGTTGGAAAGGTCGTATTGTGTATGCCCTCTCTTCCTGGAGACCTGCTAAAAATTAAGATATCAATGTACAAAAAGTAAAAAATTAAGATTGTAATGTACGTGAAATGTGGTATGATGTTCTTATTAGTTACACAGATGTCTGTATTGGTTTTAGACAGATTTTATTGTACTTAAATTTTTGTTGTCCAATTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	4.8e-171	scarecrow-like protein 9
Swissprot	Q9XE58.2	5.2e-122	GRAS family protein 2
trEMBL	A0A5P1FEW5	3.5e-171	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07530.1	47.65	9e-128	454	ATGRAS2;GRAS2;SCL14	SCARECROW-like 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G00399	AT1G07530.1	468	223	5	133	583	305	767	47.65	9e-128	454
AfisC7G00399	AT2G37650.1	480	218	4	132	582	242	714	47.08	9e-127	451
AfisC7G00399	AT5G59450.1	572	311	10	32	584	36	601	41.26	2e-122	436

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	212	581	372.8	1.5e-111

Gene Ontology

Accession	Ontology	Name
GO:0003723	F	RNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009639	P	response to red or far red light
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010200	P	response to chitin
GO:0044434	C	chloroplast part
GO:0044702	P	single organism reproductive process
GO:0044763	P	single-organism cellular process
GO:0048519	P	negative regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network