Detail information of AfisC7G00483


Location
GeneChrStartEndStrand
AfisC7G00483chr79614301396161112+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020252422.15.4e-95LIM domain-containing protein WLIM2b-like
SwissprotQ9M047.17.5e-86Widely-expressed LIM protein 2B
trEMBLA0A5P1FEP73.9e-95LIM domain-containing protein WLIM2b-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G55770.178.695e-83 303WLIM2bGATA type zinc finger transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
--

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00412.19LIMDomain106440.62e-10
PF00412.19LIMDomain10916442.94e-11

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0001725Cstress fiber
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0003729FmRNA binding
GO:0051015Factin filament binding
GO:0051017Pactin filament bundle assembly
GO:0003785Factin monomer binding
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005925Cfocal adhesion
GO:0008270Fzinc ion binding
GO:0030835Pnegative regulation of actin filament depolymerization
GO:0031529Pruffle organization
GO:0032154Ccleavage furrow

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09377CSRP; cysteine and glycine-rich proteinEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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