result

Gene information

Detail information of AfisC7G00993

Location

Gene	Chr	Start	End	Strand
AfisC7G00993	chr7	197733238	197735144	-

Sequences

CDS

Protein

Gene

>AfisC7G00993
ATGCCTGCGAAAAATGCTGGTAGAAGGGGAATATTTATCGACGTAAGTATTTCACCTTTACACAACCTTAGTTTTCATTCCACGGATATACCTTTCGAATCTGTCTCTGTATCCAGACGTGTAAACTATGCCTGTTTTGTTTGAACACATCAGATGTTAATTAGTATCTCTTCTTCTTTTCCCATTTATATTTCTACATCTTATGGAAAATGTCTGTTGTGCGCAACGTCTACAGATATGGGTTTTTAGATTCGATTAGTGCCTAACTTTATCTTGCTCAATGCAAAATGTTTGAATAATATGTTCCAATAATACCTTTTGTATTATTTGGTTTACATAGCAGGGAATATCACGAGCAGACAATGGTGCTAACCTTTGTGATAGTTGAGTCATGTTTCTTTTTTAGTGTGCTTAGAGTGTGAGGAGTTATGTATTTAATATCCTTATAATTCAAGTCAATTTTTTTGCCAAAGTTCAAATAAATATCTTTAGGGTCCTCCCTTATTTGTATATTTTGTCAATTTAGAAAGAATACCATGCATCTGAAATACCTTTTAATGGTTTTAAGATTCAAAGTTTCTTATTTAAGTATAGATTGTTTTAGAACAAGAACATATATGAAAAGAAATAAAACTGGATTAGATAACATATATGGACCATTAATTGCATACAATTACTTGCCTAACTTTTATTTATTTGATATAGAAAAACTTGCATATATTGTTATTATGGTGAAGCATTTACCTTCTCAAGCAGCACCATTATATCTAATCATTACGAAAAGAAGATTACGCTTTTGGTGACAGTCCCTTGCCCATTTATACCTCGTGCCTTATGGTTAAGGAAATTTTGTGAAATATCCTCTAATAGAACTTGCTCATTTTATACCTAAATTTTTAATAACGAAACATCAGTAGTCAGCATAATCCCAAATTTCAATCATTGTTGTCTAAACTTCTTAATTTCATTTGGCAGCCAGAGCCTCGAGATGGTATGATTCAGTGTTTCATTAAGAGGGATAAATCGAAGTTAACTTATCATTTATATCTATGTCTTACTCCTAGTAAGATTTCTTTAGCTTATTCTTTTACATTACATCTTCAAGTACTTCAAATCTAGTCTCCTCTTAATTTTAGTAACATTTAATTATTTTTATTATTTGTCAACTTACATCTCAATGGCTGCATCTGTTTGATTCATTGCAACTTGTCCAGGAGTTGGTATAAAATCTTGAAATATTCTAAAGTAAATGAATTAAAAATCTCTAAATGCAAACCAACTACACAATAACTACATTATCAACACATAAACTTGATGCAACAAAATTGACTAACATTGCATGAGAGATCTCTCATGTATTGTTTTGTTATATTCAACAAATTTGTGGAGGGGACGTCAGCCATTATGATACAGTTGGTGTGATCAAAATTACACCAGCATCTGAAAATTATTAAACTTCTTTTTTAAGTCTTAACATGTCGTTCGATTATGCAGTCGTGCTTATTGAAAATCGAAAATTCCTCCTTTCTACCAAGCGAGTTCGTCGCACTACAAGTATCGATTATGTAATCTCTATGAACATTGACAATATATCTCGATCGAACAAGACTTATGTTGGGAAATTGAGGTAATTCCGTTTATTATAAGCTTTCATCATTTTTTTACATATGCACTTTAATTTTTTTAATCTTAGTTCGATGTTATTTAATAGGAAGTAATCTTAGTGCACGATGTTGCAGTTTTTGGTGGGAAGTGGTGCAGACCTTACATGAGATGGTGTCACCAAATGAATTGGCTGTAATTAAGAAATGCCCACGGGAACTTAGGTAATCCTTGTAGGTTGGCTCAACTATATATAAGTATATTTGTGTGTATAGACCAGCAGATCTGGAATGTTGAGCAGGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PKA66797.1	3.9e-24	Tubby-like F-box protein 8
Swissprot	Q9FRH7.1	1.3e-24	SKP1-interacting partner 26
trEMBL	A0A2I0BG68	2.8e-24	Tubby-like F-box protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76900.1	69.86	2e-26	114	AtTLP1;TLP1	tubby like protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G00993	AT1G76900.2	73	22	15	87	121	193	69.86	2e-26	114
AfisC7G00993	AT1G76900.1	73	22	15	87	121	193	69.86	2e-26	114
AfisC7G00993	AT1G43640.1	73	23	15	87	119	191	68.49	6e-26	112

Ortholog group

Species	Genes
Allium cepa	g133222.t1; g456767.t1
Allium fistulosum	AfisC7G00993
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os12g06630.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01167.15	Tub	Domain	15	88	72.7	3e-20

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005829	C	cytosol
GO:0016567	P	protein ubiquitination
GO:0005634	C	nucleus
GO:0005929	C	cilium
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008081	F	phosphoric diester hydrolase activity
GO:0009536	C	plastid
GO:0009620	P	response to fungus
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0035091	F	phosphatidylinositol binding
GO:0061512	P	protein localization to cilium

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network