result

Gene information

Detail information of AfisC7G01177

Location

Gene	Chr	Start	End	Strand
AfisC7G01177	chr7	235296361	235299551	-

Sequences

CDS

Protein

Gene

>AfisC7G01177
ATATAGTCATATACCGTAATATTCTCCACTCCTACTATAAAACTCAGTCTCCCTGCCTCTCTCAACTTTAGCTCCACAAAAACAAAAATTAAACCACAAATGTGTAAAAATATAGCAACAATATAATATCTAAATATAGATCAAAATTTTAGCACTGTACCCAATCGCCAGAGTCTCAAATTCCGGCAAAATTTGAGATAAGATACCGATATAATCAACTGTCAATATACTTACTTGTACTGTTGATGATGGGATTTTCGTTGTTTCCGATGAAAACCTCAACAAGGCTACTATGGAGTACCAGTTTCTTTCGTCACAAGATCTTTGTTGCTTTGTTCTGATAACTACCGATATAGCTGATAGTACATATTGCTCTACGTATACGGTCAATAATAATTTTCCTGTATAATTCAAAAAGATCTATTAAAGATCCTGTTGTTGAGTGATCTGAAATGATGGATTCTGGTCGTCTGATTTTCGATTCTACTTCTTCTTCAAACCCTGGTTACACTCTCTTCTTTCAAGGTACTAGTAATTCTTTTACCTAATTAGTACGTTAATTTCATTATATTAAAACAAACTGCTTGGAATATATTATAGCATACACTGGGGAAAGAAGTGAATCCACTTGAAATATTGGACATGATATAGTATGTACAGATTTGGATGAACTGTATTTGATTTTTTTTTTATGGATTTATTATATATGCCATTCTAATCAGATGTACAAACTCGTGAAGAAATATTAATTCATAAGAAGTAGGTAATAAAATCATAACACTTGCATATTTTCATGTTACCCCATTTAGTATTGGATACATGGTTAAAATACAGATATCCAATGAATAGTTATACGCATCCTGTGCACAAACCCAAAATCTGGTATTTGGACAACACAAATGTACAATGAGTTGGGTGAATTCTTTATTTTTTGATGTTGAATAAAAATGAATTAGTATTAGTAGAAGTTATATGCTGATTTTGTTATTTTTGGAGTGAAATGAAGGGGAGAGGTCATTGTTTGGCATGGAGCAGCGCACAAATAAGAGGCTGCCTTTCTTCACCTCTTCAGAGGAACTTGAAGAGGAGTATTATGACGAGCAACTCCCTGAGAAGAAGCGCCGCCTCACTGCTGAACAAGTAATGATAGTTCAAATATAGCAAACAAGTTAAAATTACGGAATATAAGTTAAAAGTAGCACATAAGTTATATTATTCTGATGATATTATGCTTAGAATTTCAGGACCAGATTTTTCAGAAAACCTTTGGTAAAAGGGAATATAAAATAAATTTTGTGGTAGGAAGATTGTTTGGCCATATTCTACAAGAGAACCTATCATCATCAAGTTTCCATACAAATTAAGACGTCTTAAATTTTGTGTTACTTTCATCTTTAAAGCATTTATCGACAGTTACAACATGAACAAGTGAATTCCTACAACCTTATCATACAATAACTCAATAAGAATACTTATTTATTAGAAGGAGCCATAAAGTCTGATTGATTTTCCTTCCACTACAGAAAATAATGCATCAAGACGCAACATGCTTATATTTTAATTCCTGAGTGGCTTGTCATGAAACAATGATAAGATAAATAAATGGAAAGGGACGTTATTAAAAGGATGTAGAGTTATACGTTGACTTTTAAACCATAATTAAGCACGCTTTATAAAGTAGGATGTCCAATTCATATTCACATAATATATTTAGTTACAATGTGAAATAGTAATTGAAAATGTACAACTGAAGGTACATATGTTAGAAAAAAGCTTTGAGTCAGAAAATAAACTAGAGCCAGAGCGAAAAGGAGAGCTGGCAAAAAAACTTGGGCTGCAGCCAAGGCAAGTAGCGGTCTGGTTTCAGAACAGGCGAGCAAGATGGAAGAACAAGCAGTTAGAACATGACTATGATCGACTGAAAGCGGCTTACGATGCCCTATTAGCTGATCATGATTCACTTCTAAAAGACAACAATGGCCTTCGCTCTCAGGTATATTAAATGTGTTAAACTTAATTGTTTTGTTCCTATGATTTAAAATAAACTGTTCATACACTTACCTCCCATATTATGCCTTCTTATGGTAGAAGTTGTAAAACTCAGTTATTTATAATATTTAAAATCGTGTATGTGTATGTGTGTATGAATGTATTTATATATGTATGTATATAAATTATAAAGACACACACACACGAGGATCATATTTAAGCATACTGATCATGTTACACTTAGGGAAGACAATTCAGGATCTAGAAATAATGGCATCACTGTAAATATTTGTTTGATATTTACAAGGGGAAGTAAACATGTAAGAAATACAAATCTGGAATTTGTCACATGCTTAAGGGTATATGTTCCTATCTCTTTCACGGCAAGATGCACTACACTTGACATTCTAAATAAATTAGAGTGGAGGAGTTGATGTCACGTATATATTCGACAAGTCCAGTATATATTGGCCCATCATAGAATAGTTTTTGGCAGCATATACTGTACGCAGAGTATGCATAAAGTATGAACAATGGCCTACAATTTGACATCCCAACCAACAACCCATATTCTCATAAATTTAACATTTTTGGAAATGTGAATTAAGATGTCTCCTACTGTACAATCAGGTGGCAAGTCTGAATGAAAAACTACAAAACAAGCAAATAGCAGCAGGGCCTGCATCCGAGTCATCCACTGATACAGATAACAAAGTCCACTCTATACACGAAATGAATTTCAACGCCAAAGCAGAAGACTACCAGAGCACAGGCAGTGGAGGCAGCAGCGGCGTGTTAGATAAAGAATCATACTTCCATGAAAACTTCAACGACTGCATTGTAGGGGCCGCCGCTATTGATGGTGGTGGAGGAGTTCACTCCGAAGAGGAAGATGGAAGCGATGACGGCTGTAATTACATGCCAGGTGGCATTTTTGGGGAGAATACTAATACTACCGAAAACTGGTGGGGTGTTTGGAATTGAAGAATAATGTCATTCTTCAACCAAAACATATGTCTTCCCTTTTTATGTGTTTAATATTGTATTAATTATAAAGCCCGAACTGTTATGAATATCTGTTTAGCTTCAGGCTGCTTGTTATGTATTGTGTTATGTATTTTGGTGTATGACATAAATAAGTGTGCTTAAAGTACACAACTTTTATATTTTTACATTGTGATTACGTTTAGACGATTAGTTCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264484.1	1.3e-51	homeobox-leucine zipper protein HOX16-like
Swissprot	Q6YWR4.1	1.1e-34	OsHox16
trEMBL	A0A6I9QQB8	4.9e-48	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	53.42	6e-52	200	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G01177	AT3G01470.1	219	86	6	2	209	1	214	53.42	6e-52	200
AfisC7G01177	AT4G40060.1	237	117	4	58	264	56	289	36.71	5e-32	134
AfisC7G01177	AT1G69780.1	155	76	3	50	200	72	225	47.74	3e-31	132

Ortholog group

Species	Genes
Allium cepa	g528284.t1
Allium fistulosum	AfisC7G01177
Allium sativum	Asa0G02805.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g49700.1; LOC_Os02g49700.2; LOC_Os02g49700.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	61	115	65.0	3.7e-18
PF02183.15	HALZ	Family	116	158	62.7	2.5e-17

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network