result

Gene information

Detail information of AfisC7G01516

Location

Gene	Chr	Start	End	Strand
AfisC7G01516	chr7	305030748	305033671	+

Sequences

CDS

Protein

Gene

>AfisC7G01516
ATGCAGTTCTCACCTCATCCTTTACTTTTCTTCATCTTCCTAAACATACCAGTTCTCCCTTCTTCCTCGGAGCCAAACCCAGCACCTTCTCCATACAAAAACTGCGCTCCTCAACCATACATATGCGGCGATACAAACTTCACTATATCATATCCATTCCATATAGATTCCCGTCCCAGCTACTGTGGCAATCCAGACTACTTCATCAACTGCACAAACAATAACACAACTCTAGCCATCACAATCTCCAACCAACAGTATAAAATCACTGACATCGACTACGACAACAATCTCGTGAACATAGTCAATGAAGACTTCGTATCGGACACAGTCTGCCCTCGAGCTTTTACCAATACTACTATCAACACCAACTTGTTCCAGTATTCTCAGCGCGACCGGAACTTGACTGTTTACATCAACTGCAGCACACTTCTGATCATTCCAGCGATAGTAAATTATGCATGTTTAGATTTTAGTGGTCAATCATACTATAGGTTGGATAATGGAACTTTGGATGATTTGTTCGGGAAGTGTAGTTCTATAATTAATGTGCCGTTGGGTCAAGAAACCGCTAATAATTTGATTAATGGAGGGTTGCAGTTTAGACAGGCTTTGCAGCAGGGTTTTACTTTACAGTGGACTGCCGGTTCTGATTGGTGCGGTACTTGTGTGAATTCTGGAGGGTACTGTGGGTATAATTCCTCGGATATTGATCAGCATCTCTGTTTTTGTTCTAATGGAACTTCAACCGATTCTTGTGATTCTCGAGGTATGACCAGAGCATGGATACACTTCTTCTTTTATTTGGGTTTTCTACTTTCATGATTTTGTTCTGAATGTTTTGGTGTAATTGATGTTGCAGATGGTGGTACTCATACTACCAGAAATATTGTGATAGGTAAGACAATCTTTCTCTCTATTTTATAGGGTCTTTGAGTGCATGAAACGGAACAAACTATAGCACAACATTTAATGTACTGTATTGGAGTAAGGTAACTTGACTTCTGCCACTTTGGGGGTATATGTATATAAACTGAATACTCTTGAAGTTTTAATCAACAAACTACTAATAAGTCATACCTCAGATGCGATTTCAGTAGTTTCCATTGCAATTTGTGTTACTTCCATGATTCTAAACTGCTCCTCTTTTCTTGTATTTGTTGTAATTAGGTGTAGCATGTGGATTTGGCGGCTTCTTCTTAGCATGCGCAGGTAGCTTTTACATCTATAGGCATAAACTGAAGAAACATAAGGATACAGCTATGATTCCAAAGCAAAGTGTGTATTCTAAGTCATCTTCTGACAAAGACAAAGAATCAATCAGTTTTAATTGCAATACTCCTCTTTTCTCTTACGAAGAGCTTGTAGAGGCAACAAATGGCTTTGAAGCATCTAGAGAACTTGGTGATGGTGGATATGGAACTGTATACAAAGGTCAGTTAGTTTGCACAGCAGTTGCAGGTGTATCACTAATACCATGTCCTATAAAATTTCATGCTAGATAGTCTGAGATGCTGAATAAAAAGACAGACGATTTGGGTTAAATCATTTCAATTATAAACTGGAGTAGAAATAACTCAATTTTTGAGACAAGCAGTATAGTAACAATGCAAAATTGTAGTTTTTCCAAGGAAAAGATAATCAGACGACACATACTGCATGTATATGTGCATACATGTATGTGCATGCACTAGTTTATGTGTATGTATGTGCCTGTCCATCCATGTGTTTACGTGTACACGCCTGAATATGTGTGTTGTGCATAGCTAAGTGTATGTCATGTGTCATAGACAGTATGTTAGGAACGTCATACATGTTGAACGATATTATGCTCCAAAATCAAAGGAGTTGATATTATGGAGCTCACCGTAACAGTTTCACTGTACAAAAGTGATACTTTTTTGTTATTATAATGGCCATGAAAGAACCTTACTATATTTCAAACAAATTTAGTAGTGAATTTTAATTAAATTACTATTTAACATCTACAAATTTCAGGTGTTCTCAAAGATGGACGAGTAGTGGCTGTAAAGCGCCTATATGAAACAAGCTACAAGCGAGTCGAGCAATTCATGAATGAAGTAGAAATCCTCTCTGGCCTCCGCCACCCTAATCTAGTCACACTATATGGCTCTACTTCTCCTAATTCTCCCCACCTACTTTTAGTTTACGAATTTATCCCTAATGGAACATTAGCGGACCATCTCCACAACCCAACCCGCTCCAAATCTCTCTCATTATGCCTTCGCCTAAAAATGGCTATTGACACTGCTGCTTCACTCTCCTACCTGCATTCTATTGACATCATTCACCGTGATGTAAAATCCAACAATATACTAGTTGACAATAATTTCAACATTAAAGTAGCCGATTTTGGACTATCTCGTCTTTTCCCTCCAAATAGAACACATGTATCTACTGCACCTCAAGGCACACCAGGTTATTTAGACCCTGAGTATCATAGGTTTTACCAACTTACTGATAAGAGCGATGTTTACAGTTTCGGAGTTGTGTTGATGGAATTGATATCATCTAGACCGGCTGTAGATATTGATCGAAAACCAAATGAGATTAGTTTGGCAATGGCTGCGATTAGTAAGATACAGAAAGGCAAGCTGACTGACTTGATCGATCCTTATCTCAGATTTAATTCAAATCAAGAAGCGAATAGAATCATCACACAGATTGCTGAGTTGGCGTTCAGATGCTTGCAAATGGATAGAGAGATGAGACCATCTATAAAAGAAGTGTTGAAAGAATTGAAAGAAATTGAAGAACGTGCTCATTTTGCTTATGAAGACGATTGCTACGAGAAGAAAATGAGAGAAGAGGCAACTTTGTTGAACAAATCAGGGCCTGGTTCACCTGATACTGTCTCATTTACATGGACAAGTAGGTCGACAACTCCAAGCGCAAGTAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265630.1	2.9e-188	LOW QUALITY PROTEIN: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
Swissprot	P0C5E2.3	6.1e-127	Probable receptor-like serine/threonine-protein kinase LRK10L-1.2
trEMBL	A0A8B7MVV4	1.1e-186	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X6

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18390.2	41.97	4e-135	479		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G01516	AT1G18390.2	679	326	20	9	656	13	654	41.97	4e-135	479
AfisC7G01516	AT1G18390.1	647	344	18	28	656	24	648	40.65	9e-129	457
AfisC7G01516	AT5G38210.1	647	317	18	8	616	17	635	40.80	2e-118	423

Ortholog group

Species	Genes
Allium cepa	g404311.t1
Allium fistulosum	AfisC7G01516
Allium sativum	Asa3G03630.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13947.3	GUB_WAK_bind	Domain	41	143	35.6	1.2e-08
PF14380.3	WAK_assoc	Domain	171	247	56.2	4.4e-15
PF00069.22	Pkinase	Domain	340	609	173.5	4.7e-51

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0006952	P	defense response
GO:0004383	F	guanylate cyclase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0006182	P	cGMP biosynthetic process
GO:0009311	P	oligosaccharide metabolic process
GO:0009555	P	pollen development
GO:0009617	P	response to bacterium
GO:0009620	P	response to fungus
GO:0009751	P	response to salicylic acid
GO:0009826	P	unidimensional cell growth
GO:0009992	P	cellular water homeostasis
GO:0046777	P	protein autophosphorylation
GO:0048527	P	lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network