result

Gene information

Detail information of AfisC7G01600

Location

Gene	Chr	Start	End	Strand
AfisC7G01600	chr7	321808258	321809691	+

Sequences

CDS

Protein

Gene

>AfisC7G01600
TGCGCCTCGTGTATTTGTGCCCAAACGTATAGGCGGACTTTTTGTCTTTAATTTTCCATTATAAACTCCGAATTCGCAGGAACGCTGCCTATATTTTCAGTTCGCAAATGGAAGCTTCGGATTTCACTTACGGAAATTACCCCAACTCGGAAAATAATGAATTCGTTCAGGAGAATAATTTCGTGGTGGAGGAGTTCTTCAATTTTTCGAACAAAGATGACGAAGTCATCATCGACGAAAATGATGCAGCTAAAGACGCCAATCTCGGAGAGTCCGCCAATTCTGCCGGTTCTGGTGATAGTAGCAATTTATCCGGTGACGGTCAGCACTTTTCTGGCGAACTTTACGAGCCGGTAATTTTTCAGTATTATTAATTTTGGGTGAATTAAAATTACCGAATAGTTCAACAGCATGGCGTTATTGAATTTGAAGTTTCTAACACTTGTTGCATTTATTTATTCCGCGAATATTTTCATAGTTTTTGGGAAATTATAGTTTGATACCTTTTATTTGTGGTATTTACGTTCATTACCTTTTGTATAGCAAGATGAATTAGAAGATTTGCAATGGGTTTCACACATTGTAGAAGAAAACGACTTGTTTTCAGCTGAAGAGCACAAAAAACTCCAATTAATTTCCGGAGTCAAAGCGGGTTCAAGTTCGGATGCAAATTCTTCAATATCCGAAATCCGCGAAATCGGGTGCAAATTCACGGCCCAACAACCGACAAAAGCAGCTCGGAGCAAAAGGTCGCGCAACTCGCAAAACCTCTGGTCATCCCGGCTGCTAGTCCCAACTCAGTCGGATTCAGAGTCCATGTATCTAGTCAACCCAGACCAGGCGAGAAAATGCCCGAAACCCGTTAAGAGAAAGGAACCTGCGATGATGGCTGCATCAGACGGTAGGAAATGCTTGCATTGCGCAACAGACAAAACTCCACAATGGAGAACTGGGCCGTTGGGCCCAAAGACTTTATGCAATGCATGTGGGGTCAGGTACAAGTCGGGCCGGTTAGTGCCTGAGTACCGGCCGGCTGCCAGCCCGACATTTGTGACTACGCAGCATTCGAATTCGCACAGGAAAGTAATGGAACTGAGGAGGAAGAAGGAAATGCAGACGCAGCAGTTTATGAGCAGCGTTTATGACGATGGGGACGATAAGTTTTTGATTCATCAGCAGTTAACCACTGATTATAGGCAGCTGATTTGAATTTTTAAAGTTCTGTTCCCCTTGTTGCTTTTTGAACTTTGAAGCCGTAGCTTATTTGATGTTTCTTTCATTAATTTTGCGCAGTTTTATTTCTTTTTTTCGTTTTAATCGAGAAATTCAGTTTCTTTTAATGTAAGAACAATAATAATGTTAGTTACAGAGAAGTGTATGACAATTTTGCAGTGAGTAGTGAATGGTTTGGTTGAGAAAGTTTGGTAAATTGTG

Functional annotation

Database	accession number	e-value	annotation
nr	OVA08555.1	7.0e-57	zinc finger protein
Swissprot	O82632.1	4.9e-47	GATA transcription factor 9
trEMBL	A0A200QDS8	5.0e-57	GATA transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	44.63	6e-58	221	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G01600	AT4G32890.1	307	130	12	23	303	16	308	44.63	6e-58	221
AfisC7G01600	AT5G25830.1	341	128	14	15	303	4	331	43.40	1e-55	213
AfisC7G01600	AT3G60530.1	204	67	7	75	273	63	228	46.08	3e-37	152

Ortholog group

Species	Genes
Allium cepa	g175187.t1; g175189.t1; g523096.t1
Allium fistulosum	AfisC7G01600
Allium sativum	Asa3G03564.1
Arabidopsis thaliana	AT4G32890.1; AT5G25830.1
Oryza sativa	LOC_Os01g54210.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	205	239	57.7	5.9e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009725	P	response to hormone
GO:0009845	P	seed germination
GO:0030154	P	cell differentiation
GO:0048581	P	negative regulation of post-embryonic development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network