result

Gene information

Detail information of AfisC7G01978

Location

Gene	Chr	Start	End	Strand
AfisC7G01978	chr7	395737319	395738371	-

Sequences

CDS

Protein

Gene

>AfisC7G01978
TGAATTCTGAAAGCATTATCAAGAAAATTTGAAGGCTGCCTTCACCATTAATAGATGTATGTAAAATTTCAGTGTTCGCCAACAGACAAGGAACAACAATCAAAGGATCCATGGAATGCCGAAGGAAATCAAAACGACCACAACGACAGACAAGATAAACCAGCATTGAAAAAACCGGATAAAATACTTGCCTGCCCGAGATGCCAAAGCATGGACACGAAATTCTGCTACTACAACAATTACAACATAAACCAACCTCGCCACTTCTGCAAGAACTGTCAGAGATACTGGACAGCCGGCGGCACCATGAGAAACGTTCCAGTTGGTGCTGGTCGCCGCAGAAGCAAAAACTCTGCAAATTCTCAGTTCCAGCACCTGATCATTTCTGATGCTGCATTAAAGGCCAATGATTGTAGTAGCAGTAACAGCAGTAGTAGGGTTCTTAGCTTTGGATCTGATGCACTGCCTGCTGTAGCAAATGAACAAAAAACTGTAACTTCAAATCCAATAGACGACAGCAGCAGTGCAAATTTGCAATGGGCACCATGGCCTTATCCATGGGCACCCCCTCCTACTCCAGTACTATGGGGTTATGGTACACCTTGGATATCCCCCTATTGTTATGACTACTACTTCTTCTGCACCTACATCAGGGCATGTATCTCCGCTTGGAAAACATTCAAGAGAAAGAGATGTTGTTAGTAAAGAATATGAAGGTGATTCAGGTAGAAAAGGAAATATATGGATACCTAAAACACTGAGGATTGATGATCCTGAAGAGGCAGCAAAGAGCTCGATCTGGGCAACTATGGGGTTTGATAATGAAAAGGCTGACAAAGGCCTTTTTAAACCATTTCCAAAGAAGTCTGTGGAGCTTAAGGCTGATAGCAATTCACAGTTGTTCAATGTCAATCCTGCTTCATTGTCCAGATCTGTAAATTTCCAAGAAGGTTCTTAGCATCACCGATTAAGTGATATGGTTCAGCTTATTACTTTCTTTTTTTTTTTTTTGTAAATAAGATTGAGATTTGAAGATGGAAGACTCGGGTTATG

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31847.1	5.8e-98	cycling dof factor 8, partial
Swissprot	Q8LFV3.2	4.9e-33	H-protein promoter-binding factor 2a
trEMBL	A0A291FGD4	4.2e-98	Cycling dof factor 8 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G47500.1	57.89	2e-36	148	CDF3	cycling DOF factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G01978	AT3G47500.1	133	49	3	4	136	75	200	57.89	2e-36	148
AfisC7G01978	AT5G39660.2	104	34	2	38	137	131	233	62.50	1e-33	139
AfisC7G01978	AT5G39660.1	104	34	2	38	137	131	233	62.50	1e-33	139

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	43	99	111.3	1.6e-32

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process
GO:1902455	P	negative regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network