result

Gene information

Detail information of AfisC7G02734

Location

Gene	Chr	Start	End	Strand
AfisC7G02734	chr7	537440093	537442482	-

Sequences

CDS

>AfisC7G02734
ATGGCAGCCCTAGCACCCAAGAAATCGAAGAGCAGAAAAGCCTTAAAAGATATTTCCTCTAACGAACTTAATGTCTCTGCTGGAAGAATTTCATCTTCTCTTGCAAAATCAACGGATATTTGTTATTCCAAAATCCTTTCcCCTGAAAAGTCCATGAAAAACACTTCGTTAGACATAAAAGAGAGATCTTTGGCCGATGAACTGAAAGAGGTGAAAAGAAAGCTTAAGCATCTTCGAATTGAGAAAGAAAAAACGGAAGAGCTTTTGAAAGAGAGAGACGCGATCATCAAATCCAAAGAGGAAGAGCTTGAAAACAGAGCTAAAGAACACGAAAAACTTCAAAAGGAAATCAAGAAGCTGCAAAAACTGAAGGAGTTCAATCCCACGATGAATTTACCTGTAGTTAAGTCTTTGAGAGAGAAGGAGCAGGAGAAGAACAAAAAACTGAAGAAGCCCTCTTCTGCTTATATTTTGTGGTCTAAAGATCAGTGGAACGAGGTAAAGAAAGATAATCCAGATGCTGAGTTCAAAGATATTCCAAATATATTGGGAGCCAAGTGGAAAAATTTAAGCGCAGAGGAAAAGAAACCTTTCGAGGAGAAATACAATGAAGAGAGGATGATATATTTGCAAATTGCTGGCAATGAAAAGCGAGAAATGGAAGCACTGAAACTTTTGGAGGAAGAACAAATGCAAAAGGCTGCGATCAAGTTATTAGAACAATACATGCAGTTTAAGCAGGAAGCTGATAATGAGGGGGCAAAGAAATCAAAGAAAGAGAAGGATCCTTTGAAACCAAAGAAGCCTATGTCTGCATTTTTGTTGTTCGTGAATAAGCGCAGGCCAGAATTACTTGAAGAAGAAAAGAGTATCGTTGAGATATCTAAGATAGCTGGTGAAGAGTGGAAGAACATGACTGATGAAGAGAAAGCTCCTTATGAACAGAATGCAAAGCTGCTGCGGGAAGAATACAACAACAAAATGGAGGTCTACAAGCAAAACAAACTTCAAGAAGCTGCCAATCAAGAGAAGGAAGAGATGGAACAGGGAAAATATTTGAAACAGGAAGCTCTTCAGTTACTTAAAAAGAAAGAGAAAGCTGAGGATATCATCAAGAAAACGAAGGAGAACAAGAAGAAACAGAAGGAGGAGAAGGAATCTGATCCTAGCAAGCCTAAGAAGCCTCCTACTTCTTATCTTCTTTTCAGCAATGAAATGAGGAAATTGCTTAAGAAGGAGAAACCGGATGTAGGGAATTCTACTCTTAATGCTATGATCTCAGTGAAATGGAAGGAGTTAAATGATGAAGAGAAGAAGATATGGAACGAGAGAGCAAATGAAGCAAAGGAATTATACAAAAAAGAGATGGAAGAGTACAACAAAGCTGCTGCTTTAAACCATGCAGTTACTGCTTCTGAAAAATAG

Protein

Gene

>AfisC7G02734
CAGCAATCTATCTATTTCTTGTAAGTCATGGCAGCCCTAGCACCCAAGAAATCGAAGAGCAGAAAAGCCTTAAAAGATATTTCCTCTAACGAACTTAATGTCTCTGCTGGAAGAATTTCATCTTCTCTTGCAAAATCAACGGATATTTGTTATTCCAAAATCCTTTCcCCTGAAAAGTCCATGAAAAACACTTCGTTAGACATAAAAGAGAGATCTTTGGCCGATGAACTGAAAGAGGTGAAAAGAAAGCTTAAGCATCTTCGAATTGAGAAAGAAAAAACGGAAGAGCTTTTGAAAGAGAGAGACGCGATCATCAAATCCAAAGAGGAAGAGCTTGAAAACAGAGCTAAAGAACACGAAAAACTTCAAAAGGAAATCAAGAAGCTGCAAAAACTGAAGGAGTTCAATCCCACGATGAATTTACCTGTAGTTAAGTCTTTGAGAGAGAAGGAGCAGGAGAAGAACAAAAAACTGAAGAAGCCCTCTTCTGCTTATATTTTGTGGTCTAAAGATCAGTGGAACGAGGTAAAATGACTTACATTGTTGATTTCTAATAGACTATGTAAATGCTATCCAATGTTCACATGGTTTATTACACTGCTGCAGGTAAAGAAAGATAATCCAGATGCTGAGTTCAAAGATATTCCAAATATATTGGGAGCCAAGTGGAAAAATTTAAGCGCAGAGGAAAAGAAACCTTTCGAGGAGAAATACAATGAAGAGAGGATGATATATTTGCAAATTGCTGGCAATGAAAAGCGAGAAATGGAAGCACTGAAACTTTTGGAGGAAGAACAAATGCAAAAGGCTGCGATCAAGTTATTAGAACAATACATGCAGTTTAAGCAGGTAGCAAATTGATTAGTAGTCTTGTATTAATGTTGCAACATTTCCTCTTTTGAACATTTTAATGTATGAATTTGTTCTTGCTACAGGAAGCTGATAATGAGGGGGCAAAGAAATCAAAGTAAACTACGCTCTTTGTTGTGTTATCATAGTTATTTGAAATTTGTCTCCATTTTATGTCTTTGTAATTGGTTCGTTTGTGCATGGATGTAGGAAAGAGAAGGATCCTTTGAAACCAAAGAAGCCTATGTCTGCATTTTTGTTGTTCGTGAATAAGCGCAGGCCAGAATTACTTGAAGAAGAAAAGAGTATCGTTGAGGTAAAATGTAGTTTTGATTCTTAAAAAAAAGAAGTTGATAAAAATTATTTGGTGTTGGAGTTTCAATTTTATTTGTTTGAATGTGGACAGATATCTAAGATAGCTGGTGAAGAGTGGAAGAACATGACTGATGAAGAGAAAGCTCCTTATGAACAGGTTTCTTACTTGGATCTCTAAATTTGTACATAAACAAAGTTTGAATGCAGTATCCTTTACCAAATATCATCATATGTTGATGGCATTTCAGAATGCAAAGCTGCTGCGGGAAGAATACAACAACAAAATGGAGGTCTACAAGCAAAACAAACTTCAAGTAATAATCATATACTTGCAATGTTTTATTTATAAATAGTAGTTTACTGGTTTGCAAAATTGAGTTAACTTTTTGCTCCAAAAACAACAGGAAGCTGCCAATCAAGAGAAGGAAGAGATGGAACAGGGAAAATATTTGAAACAGGAAGCTCTTCAGTTACTTAAAAAGAAAGAGAAAGCTGAGGATATCATCAAGGTACTTCCAAAAATAAACCACATTAACTACCCAATTGTAGTTCGATGTGAGAAATTTAATAAGAAATATTCTGACATAGAAAACGAAGGAGAACAAGAAGAAACAGAAGGAGGAGAAGGAATCTGATCCTAGCAAGCCTAAGAAGCCTCCTACTTCTTATCTTCTTTTCAGGTATAAAATGTAGACTAATTTGTCAACAAGACTTCTATAATTATTATGAGTAGCATAAGAATCAAAATAGAAGACATGTATAATGAATTTCTTTCAACGTGTTTAGCAATGAAATGAGGAAATTGCTTAAGAAGGAGAAACCGGATGTAGGGAATTCTACTCTTAATGCTATGATCTCAGTGAAATGGAAGGTATATTACATACACTGTTATACATACATATGAACCTAGAATTGTGTTATATATGTGAGTGTTCAACATGAATTTTCATAACAGGAGTTAAATGATGAAGAGAAGAAGATATGGAACGAGAGAGCAAATGAAGCAAAGGAATTATACAAAAAAGAGATGGAAGAGTACAACAAAGCTGCTGCTTTAAACCATGCAGTTACTGCTTCTGAAAAATAGGAAGTTCAATCAGTTGCATTGAACTTGAACTTGTAGTACAGTCATTAGTTGTTTGTAGTTTAAGTTTGTACTGTTTCAGTTCTGTTAAAAACAGTGATAAACATCAACTTATATGTCTTGCTGGTTGGTATGCAGAAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020251454.1	8.1e-76	high mobility group B protein 6-like
Swissprot	Q9SUP7.1	6.4e-62	WRKY transcription factor 53
trEMBL	A0A5P1FWB9	5.8e-76	High mobility group B protein 13

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G23800.2	54.63	3e-108	389	3xHMG-box2	HMG (high mobility group) box protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G02734	AT4G23800.2	421	169	5	62	472	42	450	54.63	3e-108	389
AfisC7G02734	AT4G11080.1	409	173	2	62	462	41	442	54.03	6e-108	388
AfisC7G02734	AT4G11080.1	201	120	6	148	335	245	443	32.84	1e-12	71.2

Ortholog group

Species	Genes
Allium cepa	g401133.t1
Allium fistulosum	AfisC7G02734
Allium sativum	Asa3G02698.1; Asa3G02701.1; Asa4G01855.1
Arabidopsis thaliana	AT4G11080.1; AT4G23800.1; AT4G23800.2
Oryza sativa	LOC_Os02g15810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	150	209	62.8	2.7e-17
PF00505.16	HMG_box	Domain	266	332	62.2	4.2e-17
PF00505.16	HMG_box	Domain	392	460	67.2	1.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005694	C	chromosome
GO:0006351	P	transcription, DNA-templated
GO:0044446	C	intracellular organelle part

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09273	UBTF; upstream-binding transcription factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network