Detail information of AfisC7G03373


Location
GeneChrStartEndStrand
AfisC7G03373chr7666708136666718363+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008812302.11.7e-180tubby-like F-box protein 6
SwissprotQ10LG8.15.8e-165Tubby-like F-box protein 14
trEMBLA0A8B7D3B91.2e-180Tubby-like F-box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G47900.168.631e-158 556AtTLP3;TLP3tubby like protein 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag438407.t1
Allium fistulosumAfisC7G03373
Allium sativumAsa3G02252.1
Arabidopsis thalianaAT2G47900.1; AT2G47900.2; AT2G47900.3; AT3G06380.1; AT5G18680.1
Oryza sativaLOC_Os03g22800.1; LOC_Os03g22800.2; LOC_Os03g22800.3; LOC_Os07g47110.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00646.30F-boxDomain449631.79e-08
PF01167.15TubDomain109392312.91e-93

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005515Fprotein binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005829Ccytosol
GO:0005654Cnucleoplasm
GO:0005929Ccilium
GO:0006355Pregulation of transcription, DNA-templated
GO:0008081Fphosphoric diester hydrolase activity
GO:0009536Cplastid
GO:0009555Ppollen development
GO:0009620Presponse to fungus
GO:0009651Presponse to salt stress
GO:0009682Pinduced systemic resistance
GO:0009723Presponse to ethylene
GO:0044212Ftranscription regulatory region DNA binding
GO:0035091Fphosphatidylinositol binding
GO:0042542Presponse to hydrogen peroxide
GO:0061512Pprotein localization to cilium
GO:0071470Pcellular response to osmotic stress

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K19600TULP1; tubby-related protein 1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.