result

Gene information

Detail information of AfisC7G03520

Location

Gene	Chr	Start	End	Strand
AfisC7G03520	chr7	688296725	688300129	-

Sequences

CDS

Protein

Gene

>AfisC7G03520
ATGCAAGTAGTAGAGATGTTAAGTTTGGCAAAATGGGCTTTAGAGCAACTGGTAATCTGCTTTTGCTTGGTTCTTGACCAAAAAGACATCTCTGATATTTTCATCTTATTTGACAGGTTTTTCTTTGGGAAGCTTGGCAGGATTTAACTCTTATCATACTTATGGTTGCTGTGGCTTTATCTTTGGTTTTGGGCATTAAGACCGAGGTAAAATTTTAAGTTACTGTGGACATCTCATTGTTTATCAGGGTAAAGTATTATCCATTCTTTTGTATGCAGCATGTCAATAAACATGCAGCTTACTGACAAAATTCCCGAAATGTAATGAAAATAACAAAATAAGTAATAACTATGCCTGATTACTTAAGATGTTACGACCCACTTCCTATTTCAATTAAATACGGAATGAAATACGCCTCGCTTTCCCATTGTTTTACAAACTACACTCCATTTCGGCAATCTTTTACATATGATAAGTGGAGTACAATTTTATATGTGGAGTGTATATTTCAGTTACCTTAAACATGTGAAATTATTAAACTTTAAACTTGTCGTTTAGAGTTGGATTCAAAGTGCTCGATAATTTATTCCTTCCTTAATAGCCATGTTTTGCCTTTGATGTTTTCTCCATTGTGGTAATTATAGCAACTCCATAATTTATATTCTTTGCTGCCTGTCTGATGTCAGGGTTTTAAAGAAGGATGGTATGATGGAGGGAGCATTGCCTTTGCGGTCATTCTTGTTATACTTGTTACAGGTATGTGTTCTTTGGGCGAAATATGCATGAAGTACTAGAGAATGTTATGGTTTCTTGCTAGTACCCCTGCAAGCATGATTGTATTTTTGCATTCAAAGATTCAAATACATCATAAATGCCACTTATCCACTTTTTCCAACAATCTGTATCTTGGCCCGTGTGTGGTTCTGAGTCCTCAAATAGTTTTTTTCTTCTCCTTTTCTTCTGATGATAGAATCAGATCTGTTCATTTAATCCAGAGATGTATCAGATTGTGTGTTTAGAGGAAATTCATATGTACTTTTTTCATCCTATAACGGTATTTCAATTTCTTCTTACGTCCGCATCTTTGGAAATTTACTAGACAATAAAAATAAGTGTATTCTTTAATTATCATGGTTCTTTAAGCACCACCCCTATTCAAATTTTAAACTAATTCAACTTGTCGTGATACCATGCAGCCATCAGCGATTATAAGCAGTCACTGCAACTAAACATCCTAAGCCTTCTGAAAACTTTTGGGCCTACTTTAGCCATACTTGAGGATAAGTTGAGTATTAATAATCAGTAAATGCATAAATTTTATTAGGGTGAATGGGAAGTCATGCACAGTAATAATGATAGTTCTAGTGTTGGAATACTTATAGTGTAGAACAAATTTATATGGTCACAAGACAAACAGTATGATTAGCTAGAAATGTGTAGCATATATACGTGTATGCTAGAAATGCTAGCAAACTAGGCTTCAAATCAGATTCTGGTATAATATACCTCTGACACTTCAGCCTCCCTTCAATCTTATTGTACACGCAACTTCAGGAACCATTCAGATTTCATAGTCTGTGCATTTCGATTCACTTGCCATGACACAGTTTGTTCAAGTCTCTTTAGTTTTTAGAGCTTTCCATAGCTTGTGTATGTCTCAGTTTTATTCAAGCCTTCTTCAGATTTTCTTAGAATTTGCTTCCGCTTTGCATCATCAACAGTCGGATTTACTAGTCATGCTTCAGTTTTGTTCCACTTTCAGACTGCACTACCAGATCTATTCCTATGGTGCACATCCAGTTCAGTTCATATCATTTTTGCATTGCCGCAGCCTGACTTCTCCTACCTCAGTTTCCTTTCTCGTTTTAGCTTGACTGGCCCATGTTTCAGACCGTTTAGTGCATTAACGCATTGCCACCGTTAAATGTTATTATCAGTTTTGAAGCCCAGTTTGCTAGCATTTCTAGCATACACGTATATGTGCTACAAATTTTATACTACTAATCGTATCATCGTTAAATGTTATTATCGGTTACGATTTAGGAATTAATTAATTTTTTAAGTAGCCATTTTTTCATCTTGAGTGTAATTTTCGAGGCCAAATACTTTTGTAGCCTGTTTATGGGGGGAAAACTTTTCTTGTACTCTGAACGCGTACCATGAACCCTTGTAATTGTTACTTGTTTTGAATAAAAAATAGAAGGCGTTGAATTGCATTTGTGCTATTACTCCTGCCATTTATCATGGTCTTATTGTAATTGTATGCCCTCATCGAATTCCTTGTTAAGGGATGGGCTAAATTTTTAATAGCTTCCAAGCTAGTGATATGTTTTGCTTCTCTTCAATTCCAAATTCTGGTAAAAAACGAGTTCAACAATAATTAACGTAAAATAATTTATTAGAGCTAGTCACGGATAGAGAAGAAAAAACTCCAGCTAAGGAAGAAACTGCAGTATTGTTTGAAAAGCTTAAAGGTATATGATTGCACCTTTAAGCCTTTGTTATTCAGTTTTGACAGTTGCATAATCTTTCGATGTTGACTGGTAGGTGGTAGTTATGTTTATGTATATGGATTGATAGTCTGATACAGTGATCAAAGTGGATCGATAAAAAACGCATGTTGATAATTGTTAATTATTTGGTTGCATCAAGGTTTCAACTTGCATATTTCTTATATTTAATTATATCCTAAGCATGAACACTGATTGGAACATGGGATTGGGTATGCGGCTCATTACACTTCCATGTGTTTCATTATATGCATGTTATGAACAATATAGGATAATCAGTAAAATATGCACAAGGTTTCAACTTTCAACCGATAGTAATGTATAGTCTCCTTTTTTTAAAAAAATATGCAAATTCTCTCTATCTTTCATTTATGACTGGTCGTACTACAGTTTTTACGCAATGCTCTCGGTTTACGAGGCTCGGCAGGGGTTGAAGAAGGCGAGGAGGTGCTGGTCGCCGGAGCTTCATCGGCGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGGTAAAAATTGCATCTTTATTTTGAAATTTACAAAAGAAAGATGACTTTTTTAACTTTTTTTTATTTGTCTTGTAAATGCAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGACCAACGATGAAGTTAAAAGCCATTTACAGAAATACAAATTGCATACAAGAAGGGTAGTGCCAAATACGACAAGTGTCGCTATGAATAGAAGCTCTGTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAGTCGCATCAATCAGGGTCGCCACAGGGACCTTTTCAGATGAACTCGTGTTCTCGAGCAATGTTTGATAGTTGTGAAGATGATGGCAAGTCAGAGAGCTGCAACTGGAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	8.8e-42	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q9FX84.1	2.7e-27	Protein HRS1 HOMOLOG 6
trEMBL	A0A6I9SE68	1.8e-36	myb family transcription factor EFM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G49560.1	54.23	1e-31	133		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G03520	AT1G49560.1	142	45	6	117	242	187	324	54.23	1e-31	133
AfisC7G03520	AT2G03500.1	100	33	2	118	217	229	326	65.00	2e-31	132
AfisC7G03520	AT1G68670.1	88	21	2	121	202	214	299	67.05	1e-27	120

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	124	175	31.7	1.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0004089	F	carbonate dehydratase activity
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0004821	F	histidine-tRNA ligase activity
GO:0005887	C	integral component of plasma membrane
GO:0005388	F	calcium-transporting ATPase activity
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005789	C	endoplasmic reticulum membrane
GO:0005794	C	Golgi apparatus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006427	P	histidyl-tRNA aminoacylation
GO:0006730	P	one-carbon metabolic process
GO:0008270	F	zinc ion binding
GO:0009506	C	plasmodesma
GO:0009535	C	chloroplast thylakoid membrane
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009651	P	response to salt stress
GO:0009705	C	plant-type vacuole membrane
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010037	P	response to carbon dioxide
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0032107	P	regulation of response to nutrient levels
GO:0043069	P	negative regulation of programmed cell death
GO:0043621	F	protein self-association
GO:0048449	P	floral organ formation
GO:0055062	P	phosphate ion homeostasis
GO:0070588	P	calcium ion transmembrane transport
GO:0080022	P	primary root development
GO:1901699	P	cellular response to nitrogen compound
GO:0090701

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network