result

Gene information

Detail information of AfisC7G03556

Location

Gene	Chr	Start	End	Strand
AfisC7G03556	chr7	697050347	697052375	+

Sequences

CDS

Protein

Gene

>AfisC7G03556
GGACATATCACTAAAAATCCCAAGATACTAAGGGCACAAGCTTTATTCGAGATACCATGTGCTCATCGCGTTATCATAAGTGGCACACCCATACAAAATAATCTTAAGGTGGATATAATTTATCAGATAGTATTATAATATTCCTCCCTGATATGTTCTTTAAGACTTATTGTAAGTTTAATTATTTTTACAGGAACTTTGGGATCTGTTTTACTTCTGTTGCCCATCTGTCTTGGGTGACAAGGATGAGTGGGAACTTCTCCTTGTATTTTGATGATTTTGGATCATCTCTTTCTTGGACTAAAAAACATCATGCTTTTCAATTTTGCAGGTTCAAATACAAATATGAAAGTAAGATCCTCCGTGGGAATGATAAGCATGCTACTAATCGGGAAAAATATGTTGGATGTACGCTTGCAAAGATTTTCACTTAAACTTGAATTTCATGGTGAATTATATATGTAGCCTAGCTAACCTTTGTGCCAGGTTAGTTGCAATCCAAGTTTAGTTGTATTACAATATTTAGAGTTCTATTTCGTAGAAAGTTTCAAAACACGCTTGGCATTATTATGCTGGATTTCACTCAAATATTCATTAAGGTCACAGTTTTTATTGAAACTAGAGCGTAGAATTTGTAACTCGATATAGCAGAGTTTGCATATTAATGGAAATCTTTTACATTTATTTTTTGCTTAGTTTGTGTTACTGCAAAAAAAATATTCTCCAAAATTTTCATGCTAGGTTGGTTGTAGTGGAGATTTAGTTAGATAATGCTATGGTATTACCGAGGAATTTACAACCCTTTCTTTTAGACGGTTATTTTTGGTGGAAGAAGATTGTAATTTTTTGTCTAAACTGTTTCATTTAGTTTTTTTCATTTTGGAGTTTGCAAAGGAACATTAGATGCTTCAGATTCACTTTGTTAGTCACTACTACTTACGTGTCATCCAGAGTTATAACGAAAACTACAGCAACTCCAATAAAATTGCTCTGTTTAACCAACAGTCCATTGTCTTTGATATAGCTAATCTTTTTAGTCTTTTGCATTAGTGATAATTTACACCTATTGCTCTTTCAGTGTTATCATAAATAAATTACACTTATAGCTCCATTGGTTGACAATGTGATGACTTTGTTTTAATTGTAAGAGTTACGAAAGCGCATAAAGCCATATTTCTTGCGATGTTTAAAGAGTGAGGTGTTTGGTGAAGATGATTCAACTAACGTTAAACTATCAAAAAAGAATGAGTTGATTGTCTGGCTGAGGTTGACCAAGTCTCAGGTATTTCTTGTCTTGATTGTCATTTATTGTGATATTGCATTTGTGCAGTATATTATTCTAAATTGAATTTAAAAAAGGCAACGTTTTTTTTGGGCTTTGGATACAGAGACAACTTTATGAAGCTTTTTTGAAAAGTGATTGGGTCCATTCTTCTCTGGATGGTGGCTCGCCATTAGCTTCATTAACGGTATGTTTCGTTCAAAGTTCAAACGTTAAAATATATAGGCTGATAGCCTGATCGGTATTTTTATTCATAACTTATTGAATTTACTGTTAGTAATATGGCATGAAAACTTGACTTCTTTCCTTTGAGTTTATATTACTAAGTTGTTGTTTTCTAGCCGCATCATTATTTTTGGAATTAGTGTAATTTGATCACTAAATATTATGTTTGTCATTTGTTTTGTTTATGAGATTAAATTTACCAAACATTCTCCATTATTGAAGGTATTCTCGACTATCATTTTAGAGTTTTCCTATTCAAACGTAAATGGTATTCTAGACCCTTTTTTTAAACTTTTATCCTTGCTCACATTTATACTTTATTGCAACTGTGAATTTGTGTTGTATTACAACTGTGAAGTGCATGTTCACCATAGTAAATATGGTTCACTCCCCGAGGGATATACTTATTACTTCATACTAATCTTTTAGATATTGAAGAAAATTTGTGACCATCCGCTTCTTCTAACCAAAAAAGCTGCTGAAGGTGTGCTGGAAGGAATGGATTCAATGTTAAATCATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247322.1	1.1e-69	protein CHROMATIN REMODELING 24
Swissprot	Q8W103.1	1.2e-55	DNA excision repair protein CHR24
trEMBL	A0A5P1E0Y9	8.1e-70	Protein CHROMATIN REMODELING 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G63950.1	60.96	4e-58	220	CHR24	chromatin remodeling 24

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G03556	AT5G63950.1	187	47	3	1	163	517	701	60.96	4e-58	220
AfisC7G03556	AT3G12810.1	167	82	4	1	145	666	825	33.53	5e-19	90.5
AfisC7G03556	AT2G18760.1	173	84	3	1	148	547	712	32.95	1e-18	89.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	1	144	57.8	6.8e-16

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0005515	F	protein binding
GO:0000724	P	double-strand break repair via homologous recombination
GO:0003677	F	DNA binding
GO:0004386	F	helicase activity
GO:0035556	P	intracellular signal transduction
GO:0005524	F	ATP binding
GO:0006325	P	chromatin organization
GO:0006354	P	DNA-templated transcription, elongation
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010212	P	response to ionizing radiation
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0046686	P	response to cadmium ion
GO:0022402	P	cell cycle process
GO:0030154	P	cell differentiation
GO:0031981	C	nuclear lumen
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043234	C	protein complex
GO:0045860	P	positive regulation of protein kinase activity
GO:0045951	P	positive regulation of mitotic recombination
GO:0048441	P	petal development
GO:0071944	C	cell periphery

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network