Detail information of AfisC7G03612


Location
GeneChrStartEndStrand
AfisC7G03612chr7706539209706558069+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020256640.10.0e+00LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 4-like
SwissprotF4KBP5.10.0e+00Protein PICKLE RELATED 1
trEMBLA0A6I9QGI20.0e+00protein CHROMATIN REMODELING 4 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G44800.157.170.01410CHR4;PKR1chromatin remodeling 4

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain9013334.01.8e-08
PF00385.21ChromoDomain44948825.67.4e-06
PF00385.21ChromoDomain50555640.41.9e-10
PF00176.20SNF2_NFamily610887195.41e-57
PF00271.28Helicase_CFamily914102458.09.5e-16
PF06465.10DUF1087Domain1202125440.61.8e-10

Gene Ontology
AccessionOntologyName
GO:0000124CSAGA complex
GO:0000182FrDNA binding
GO:0000792Cheterochromatin
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980FRNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0001178Pregulation of transcriptional start site selection at RNA polymerase II promoter
GO:0001221Ftranscription cofactor binding
GO:0001501Pskeletal system development
GO:0001701Pin utero embryonic development
GO:0001974Pblood vessel remodeling
GO:0002119Pnematode larval development
GO:0003222Pventricular trabecula myocardium morphogenesis
GO:0003226Pright ventricular compact myocardium morphogenesis
GO:0003678FDNA helicase activity
GO:0006363Ptermination of RNA polymerase I transcription
GO:0006369Ptermination of RNA polymerase II transcription
GO:0016020Cmembrane
GO:0005739Cmitochondrion
GO:0005665CDNA-directed RNA polymerase II, core complex
GO:0005813Ccentrosome
GO:0006368Ptranscription elongation from RNA polymerase II promoter
GO:0006974Pcellular response to DNA damage stimulus
GO:0007051Pspindle organization
GO:0007512Padult heart development
GO:0007605Psensory perception of sound
GO:0007628Padult walking behavior
GO:0008015Pblood circulation
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008285Pnegative regulation of cell proliferation
GO:0009506Cplasmodesma
GO:0009733Presponse to auxin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009739Presponse to gibberellin
GO:0009788Pnegative regulation of abscisic acid-activated signaling pathway
GO:0010880Pregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016581CNuRD complex
GO:0016584Pnucleosome positioning
GO:0021553Polfactory nerve development
GO:0021772Polfactory bulb development
GO:0021895Pcerebral cortex neuron differentiation
GO:0030217PT cell differentiation
GO:0030540Pfemale genitalia development
GO:0030874Cnucleolar chromatin
GO:0031492Fnucleosomal DNA binding
GO:0032993Cprotein-DNA complex
GO:0035093Pspermatogenesis, exchange of chromosomal proteins
GO:0035116Pembryonic hindlimb morphogenesis
GO:0035909Paorta morphogenesis
GO:0036091Ppositive regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0036302Patrioventricular canal development
GO:0040018Ppositive regulation of multicellular organism growth
GO:0042048Polfactory behavior
GO:0042766Pnucleosome mobilization
GO:0042826Fhistone deacetylase binding
GO:0043167Fion binding
GO:0043584Pnose development
GO:0043967Phistone H4 acetylation
GO:0044822Fpoly(A) RNA binding
GO:0046695CSLIK (SAGA-like) complex
GO:0048752Psemicircular canal morphogenesis
GO:0050767Pregulation of neurogenesis
GO:0050890Pcognition
GO:0060021Ppalate development
GO:0060041Pretina development in camera-type eye
GO:0060123Pregulation of growth hormone secretion
GO:0060218Phematopoietic stem cell differentiation
GO:0060303Pregulation of nucleosome density
GO:0060324Pface development
GO:0060384Pinnervation
GO:0060411Pcardiac septum morphogenesis
GO:0060429Pepithelium development
GO:0060850Pregulation of transcription involved in cell fate commitment
GO:0061628FH3K27me3 modified histone binding
GO:0070062Cextracellular exosome
GO:0070615Fnucleosome-dependent ATPase activity
GO:0071441Pnegative regulation of histone H3-K14 acetylation
GO:0071894Phistone H2B conserved C-terminal lysine ubiquitination
GO:0098532Phistone H3-K27 trimethylation
GO:1900050Pnegative regulation of histone exchange
GO:1901798Ppositive regulation of signal transduction by p53 class mediator
GO:1990841Fpromoter-specific chromatin binding
GO:2000023Pregulation of lateral root development
GO:2000104Pnegative regulation of DNA-dependent DNA replication
GO:2000616Pnegative regulation of histone H3-K9 acetylation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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