Gene | Chr | Start | End | Strand |
---|---|---|---|---|
AfisC7G03612 | chr7 | 706539209 | 706558069 | + |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020256640.1 | 0.0e+00 | LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 4-like |
Swissprot | F4KBP5.1 | 0.0e+00 | Protein PICKLE RELATED 1 |
trEMBL | A0A6I9QGI2 | 0.0e+00 | protein CHROMATIN REMODELING 4 isoform X2 |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT5G44800.1 | 57.17 | 0.0 | 1410 | CHR4;PKR1 | chromatin remodeling 4 |
Species | Genes |
---|---|
- | - |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF00628.26 | PHD | Domain | 90 | 133 | 34.0 | 1.8e-08 |
PF00385.21 | Chromo | Domain | 449 | 488 | 25.6 | 7.4e-06 |
PF00385.21 | Chromo | Domain | 505 | 556 | 40.4 | 1.9e-10 |
PF00176.20 | SNF2_N | Family | 610 | 887 | 195.4 | 1e-57 |
PF00271.28 | Helicase_C | Family | 914 | 1024 | 58.0 | 9.5e-16 |
PF06465.10 | DUF1087 | Domain | 1202 | 1254 | 40.6 | 1.8e-10 |
Accession | Ontology | Name |
---|---|---|
GO:0000124 | C | SAGA complex |
GO:0000182 | F | rDNA binding |
GO:0000792 | C | heterochromatin |
GO:0000978 | F | RNA polymerase II core promoter proximal region sequence-specific DNA binding |
GO:0000980 | F | RNA polymerase II distal enhancer sequence-specific DNA binding |
GO:0001046 | F | core promoter sequence-specific DNA binding |
GO:0001103 | F | RNA polymerase II repressing transcription factor binding |
GO:0001178 | P | regulation of transcriptional start site selection at RNA polymerase II promoter |
GO:0001221 | F | transcription cofactor binding |
GO:0001501 | P | skeletal system development |
GO:0001701 | P | in utero embryonic development |
GO:0001974 | P | blood vessel remodeling |
GO:0002119 | P | nematode larval development |
GO:0003222 | P | ventricular trabecula myocardium morphogenesis |
GO:0003226 | P | right ventricular compact myocardium morphogenesis |
GO:0003678 | F | DNA helicase activity |
GO:0006363 | P | termination of RNA polymerase I transcription |
GO:0006369 | P | termination of RNA polymerase II transcription |
GO:0016020 | C | membrane |
GO:0005739 | C | mitochondrion |
GO:0005665 | C | DNA-directed RNA polymerase II, core complex |
GO:0005813 | C | centrosome |
GO:0006368 | P | transcription elongation from RNA polymerase II promoter |
GO:0006974 | P | cellular response to DNA damage stimulus |
GO:0007051 | P | spindle organization |
GO:0007512 | P | adult heart development |
GO:0007605 | P | sensory perception of sound |
GO:0007628 | P | adult walking behavior |
GO:0008015 | P | blood circulation |
GO:0008026 | F | ATP-dependent helicase activity |
GO:0008094 | F | DNA-dependent ATPase activity |
GO:0008285 | P | negative regulation of cell proliferation |
GO:0009506 | C | plasmodesma |
GO:0009733 | P | response to auxin |
GO:0009736 | P | cytokinin-activated signaling pathway |
GO:0009739 | P | response to gibberellin |
GO:0009788 | P | negative regulation of abscisic acid-activated signaling pathway |
GO:0010880 | P | regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum |
GO:0045892 | P | negative regulation of transcription, DNA-templated |
GO:0016581 | C | NuRD complex |
GO:0016584 | P | nucleosome positioning |
GO:0021553 | P | olfactory nerve development |
GO:0021772 | P | olfactory bulb development |
GO:0021895 | P | cerebral cortex neuron differentiation |
GO:0030217 | P | T cell differentiation |
GO:0030540 | P | female genitalia development |
GO:0030874 | C | nucleolar chromatin |
GO:0031492 | F | nucleosomal DNA binding |
GO:0032993 | C | protein-DNA complex |
GO:0035093 | P | spermatogenesis, exchange of chromosomal proteins |
GO:0035116 | P | embryonic hindlimb morphogenesis |
GO:0035909 | P | aorta morphogenesis |
GO:0036091 | P | positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress |
GO:0036302 | P | atrioventricular canal development |
GO:0040018 | P | positive regulation of multicellular organism growth |
GO:0042048 | P | olfactory behavior |
GO:0042766 | P | nucleosome mobilization |
GO:0042826 | F | histone deacetylase binding |
GO:0043167 | F | ion binding |
GO:0043584 | P | nose development |
GO:0043967 | P | histone H4 acetylation |
GO:0044822 | F | poly(A) RNA binding |
GO:0046695 | C | SLIK (SAGA-like) complex |
GO:0048752 | P | semicircular canal morphogenesis |
GO:0050767 | P | regulation of neurogenesis |
GO:0050890 | P | cognition |
GO:0060021 | P | palate development |
GO:0060041 | P | retina development in camera-type eye |
GO:0060123 | P | regulation of growth hormone secretion |
GO:0060218 | P | hematopoietic stem cell differentiation |
GO:0060303 | P | regulation of nucleosome density |
GO:0060324 | P | face development |
GO:0060384 | P | innervation |
GO:0060411 | P | cardiac septum morphogenesis |
GO:0060429 | P | epithelium development |
GO:0060850 | P | regulation of transcription involved in cell fate commitment |
GO:0061628 | F | H3K27me3 modified histone binding |
GO:0070062 | C | extracellular exosome |
GO:0070615 | F | nucleosome-dependent ATPase activity |
GO:0071441 | P | negative regulation of histone H3-K14 acetylation |
GO:0071894 | P | histone H2B conserved C-terminal lysine ubiquitination |
GO:0098532 | P | histone H3-K27 trimethylation |
GO:1900050 | P | negative regulation of histone exchange |
GO:1901798 | P | positive regulation of signal transduction by p53 class mediator |
GO:1990841 | F | promoter-specific chromatin binding |
GO:2000023 | P | regulation of lateral root development |
GO:2000104 | P | negative regulation of DNA-dependent DNA replication |
GO:2000616 | P | negative regulation of histone H3-K9 acetylation |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
K11643 | CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 | EC:3.6.4.12 | - | - |