result

Gene information

Detail information of AfisC7G03801

Location

Gene	Chr	Start	End	Strand
AfisC7G03801	chr7	734328295	734329969	-

Sequences

CDS

Protein

Gene

>AfisC7G03801
ATTTCGATCTCGATAATTTTTGCTTCTCTTACAAATGGCCGGACCTGCAAAATCAATCCAACCGAAACCAAGACAGAGAGTCGAAGCCGATACGAGTAGCACTACTACTTTGAAAAGAGCACAAGACGGCAGCGCTTTCACCAGATGGTAAAAGAACGTTCTCTTTTCTGTACTCATACTAGATCTAGGTCTTACGATTTTAGAATTTAGTTTTTCGTTTCTAAACATCTGTCTACAATTTAATGAGAGTAATATTGTTTGTGTTATTTCATCAGGTTGTTTTTGATCGGTCTGAATTTTGGTTAATTTGGTGTAGAATTTCTTACTTTTTATTTGGATTGTAATCTCTTTTTCATAAACCTAATTGGTAGTCTGCCTATTTTGGAATTTGCTTTACAATATATGCTTAGTTTTCCCTTCATATTAAAGCATTTCCTTTTCAATTATTTTAATTTTAGTGGAAACTGCAACAAGGACGTGCCCGTTGTTCTCATAGATATGCATAACTGCAGCCTTGACTCAAAAATCAGGATGAATCTAGGTAATTTTTGCTCGAACTCTCCCTACTTGTTTAAGTTCCTTAGTTTAATTATTTTCATTTTATCACTTTATGCTATTTTTACCTACAGAGGCTCAAGTTGTAGAAAAAGAGGTTCATGTAAAGAAATCCGAGAAGTAATTTTCTATCCTCCATGGCTAAACCTAATGCAATTCATTCATGAAATTGAAGTTTAATTTTGAACTAATGCAGAAAGAGACCATCTCCAACTACAACCAAAGAAAAAAAGGGTAAAAAAGTGAAGCAATCTGTTGATCCAAACAAGCCTAAGAGACCTCTTTCAGCTTATTTCCTCTTTATGTAATTATCAATTTTCTTATACTTCTATGCAGTTATTCCCAACATTCCCTTATTCCTTTAATGCTAAATATTTGAATTGGTACTTTAGGGAGGAATTTAGAAGGACATACAAAGAGGAAAACCCAGATTCAAAGGGAGTTACAGGTGTCACAAAGGAAGCTGGTGCAAAGTGGAAATCAATGACAGACGAGGTTGATATTATTTTTTATGTACACTGGATGCTAATGTATTATTGCAATCTAATATTTGTTGTGTTACATTTGAATTAATAGGAGAAGAAGAATTACAATGAGAGAGCAGCTAAGCTCAAGGAAAAGTACTTAATAGCACTTGAGAAGTACAATGCAGGTGGAAATGAAGAGGTGTGCAAATCTTTTAATGCTGGAATCATTACATTGATTGGATATTTGATGATTTACTGTTTGGTGTGTGTTTCAGGAAAAGGAAGGTTCTGATAAAGAAGCCGAGGAAAAAGAGGAGGAAGCTAATGAAGGAGGTGAAGAAGAAGCCTGTGATAAGGTTGATGAAGAGCTTGAGGACAAGGATGATGATTGATTATTTTTTGTTGTTGCCTTTTATGGTAGCTTAGGCACTCCTTTGGGGTAGTCAATGCTTTTTGTTCTTCCTTTTCATTTTTTGTGGTACTGAAAATTCTGCACTGGGTAAAAAATTAGGGCGGTATGGTTATAAATGAAAATCTATCCTGAAAGTTTTGTTTGTTTAAGTTTGCTGCTAAAATAGATATTTTATTTGTCATCAGTTGCATTATTCTTGACATGTAATGTTAAACCCATTAATTGCTATGTAAGCGAATAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022725970.1	2.4e-46	high mobility group B protein 7-like
Swissprot	Q8LDF9.1	5.3e-27	Protein NUCLEAR FUSION DEFECTIVE 7
trEMBL	A0A6P5XC86	1.7e-46	high mobility group B protein 7-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G23420.1	53.41	4e-40	161	HMGB6	high-mobility group box 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G03801	AT5G23420.1	176	72	5	1	167	1	175	53.41	4e-40	161
AfisC7G03801	AT5G23420.2	76	22	2	1	73	1	76	67.11	4e-22	101
AfisC7G03801	AT2G17560.2	123	60	3	88	207	19	136	44.72	3e-19	92.0

Ortholog group

Species	Genes
Allium cepa	g287468.t1
Allium fistulosum	AfisC7G03801
Allium sativum	Asa3G02017.1; Asa6G00065.1
Arabidopsis thaliana	AT5G23420.1; AT5G23420.2
Oryza sativa	LOC_Os08g01100.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	106	175	75.1	3.8e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000400	F	four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000790	C	nuclear chromatin
GO:0001819	P	positive regulation of cytokine production
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002520	P	immune system development
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0006334	P	nucleosome assembly
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0010197	P	polar nucleus fusion
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0030527	F	structural constituent of chromatin
GO:0032392	P	DNA geometric change
GO:0034123	P	positive regulation of toll-like receptor signaling pathway
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0040011	P	locomotion
GO:0042221	P	response to chemical
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044444	C	cytoplasmic part
GO:0044710	P	single-organism metabolic process
GO:0045321	P	leukocyte activation
GO:0045595	P	regulation of cell differentiation
GO:0048513	P	animal organ development
GO:0048523	P	negative regulation of cellular process
GO:0050663	P	cytokine secretion
GO:0050790	P	regulation of catalytic activity
GO:0051049	P	regulation of transport
GO:0051052	P	regulation of DNA metabolic process
GO:0051103	P	DNA ligation involved in DNA repair
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network