result

Gene information

Detail information of AfisC7G03844

Location

Gene	Chr	Start	End	Strand
AfisC7G03844	chr7	743353232	743353885	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020582053.1	2.9e-28	DNA-binding protein MNB1B-like
Swissprot	O49596.1	3.5e-26	Nucleosome/chromatin assembly factor group D 02
trEMBL	A0A8K0N7V7	9.4e-29	HMG box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20696.3	58.82	2e-32	134	HMGB3;NFD03;NFD3	high mobility group B3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G03844	AT1G20696.3	136	49	3	1	129	1	136	58.82	2e-32	134
AfisC7G03844	AT1G20693.2	139	49	3	1	129	1	139	57.55	1e-31	131
AfisC7G03844	AT1G20696.1	125	43	2	1	119	1	125	60.80	2e-31	130

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	31	100	78.8	2.7e-22

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000400	F	four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000790	C	nuclear chromatin
GO:0001819	P	positive regulation of cytokine production
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006334	P	nucleosome assembly
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0010197	P	polar nucleus fusion
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0042981	P	regulation of apoptotic process
GO:0030334	P	regulation of cell migration
GO:0030527	F	structural constituent of chromatin
GO:0032392	P	DNA geometric change
GO:0034123	P	positive regulation of toll-like receptor signaling pathway
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0042221	P	response to chemical
GO:0042592	P	homeostatic process
GO:0043542	P	endothelial cell migration
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044444	C	cytoplasmic part
GO:0044710	P	single-organism metabolic process
GO:0048523	P	negative regulation of cellular process
GO:0048731	P	system development
GO:0050663	P	cytokine secretion
GO:0050790	P	regulation of catalytic activity
GO:0051052	P	regulation of DNA metabolic process
GO:0051103	P	DNA ligation involved in DNA repair
GO:0051223	P	regulation of protein transport
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network