result

Gene information

Detail information of AfisC7G04109

Location

Gene	Chr	Start	End	Strand
AfisC7G04109	chr7	778772419	778777416	+

Sequences

CDS

Protein

Gene

>AfisC7G04109
ATGGAAGGCTCAAAACCTAGCAAGAATCTTCAAGAGGTAATAAACCTAGACATAATGGATTATTTGATTGAATAATAATCAACCAGCGCATAGTATTGTTATGCACAAATGTGTCGGTAGCATAATGATCATCAAAACTTTCTAGTCCACCTCCAACAATGTGAGGTCAAGTAAAAAATAATTGTTGTCCAACCGTCGACAACACTAAAGTAATATATACATTATATGTTTATTGTTTGATTTAAAAAGCAAAGGAAAAAGTATATGCTTTTTACTCTGTCAATCATGATCCTACTTTCCTAAATTTTTGAATCAATCAAATCTTCATTTTGATTTTCAATTCATATATTTCATTTACTAATAGCCATTAAGACGGTTTTTCCAATTTGATGAAACTTTTATGCAAGCTTGGTTTATAGCGTAAAAAATGTGATGCTTTATTAAAATATGTGAGAGTAGGTATATTGTTTTATGTGAATGTTCAGAAAGACATATTTTCCTTTAATACATCAACAGATGACAAGTGAAAACGATGGTAAATGGGTATTGTAATTAGTTAACAAAAGATTCCGGTTACTAAAGTATTTGCATTATTAGTGTGTGCATATCAACACACGTGTATTTATATGTATTTGAATACAGACACACATGTATGTATGTATGTATGTAAATAAGCGCACGCGCACACACATACATACACACGTAGAGAGAGTGGTTTAGTGTATGGAGTTCGTGTACGGTAGCATGTGTATATATGATCAACTGAAAGTTGTTACTAGATTTGTATATTCATCAAACATCAAAGAACTTATTATCGAAACAGCACAAAGCAGCAAGTCTTATCATTTCCTCTCTAAATGATTGGAAATACACACACACACACATCTAATAAGCTGCGTGTATTAGTTTTTATCTTACTCTTAACGAAACGTCGTTCGTGACACTGTGAGAGAATCCAGTTGCTTGTATGCGTGGATCCTGGATACTACGAGAGGTGGGCCATTCCAGCTTCGTTATGGTTGATGTTGCAAAATTCTTTTAAAGTGTTCACGATGTCAAACAACTACCGACACATAGATAATTTTCGAAGATTACAGTGCAAGGGATTGAAGATGCTTTTAGGGTAAGGTACTGACGATGGGATTGGTGACAAAAGGGGCGTAGATGGTGGGGATTACGATGGAAATGGCGACAACGGCGATCGGCAATGGTAGTGTGAATGTGTCATTGTGCCTAAATTTCATAAACAAAAAACTAAAGACTATTAAATTTAAAGTTAAAAAGTGATGGTAAAATACTTCCCGCCTCTCTATAATGTAATAAATTTTCTTCTTCTGGTAGGGTGTGTTTGCGACGAACGAAAACTGTGAGCGGGGAAGATTGGTGAACGTAGAATGCGTTTGCGGCTACGAACATGGTATTTGAGCGGATGATTTAATTTGTGATTTTTAATTTAATTAGTTTATAATTTATTAATTTATTAATTTATTATTTGTTTTCTAATAAATAATATGTGTCAATAATTTGCAAAAATAAATAAATTGGAAAATTATAAATTGCTTCGATTCAGTTCAAACTAATTCCATGACGTAGAGCACTTTGATACGATCGCAACGCAAAAAACTGCGTCTCAAATGGACCTTATTTGCAAAAGTTATTAATTTTAGAAAGTTATAAAAATTTAAAATTTATTAATTATGTTAATTAATATAACAAACGGATCAAAATTGTTCATTCAGCTGAACGTGACATTTACTCTGTTTTCGATCTTGACGCGTCGGAAGCGTCGGACACGTCAAGAACGAGAACGGATTAAAAAAGGATTACGAACGGTACCTTAACCATATCGAAAACTTTTAAAGACCCCAAATTAAAAATGAATAAATTGTTTATGATTCAAAATGCTAGAATGATCAAAATTTGAGGTGTGAAACTAAATGAGAATAAATGAAAATAATTGAATCCCACCGCATAACCCATACTTTTTAATTTATTTTATTAATTCTGGGGTGATGAAGGTAAAGAAACCGATGAAATTGTGACTGGATTTTATTAATTTAAATGGGCTAAATAAATTTCAATAAAAACCATTCCCAACCCATTGAAGAAAATAAAAAAACGGCGTTTAAAATATAAAACTCCCGCCAAAATGTTACAAAAAATTCAAGTGGTCTCGCTATAAATTACCCTCAGAAGCCACTCGCATTGCATCTTCCATCCCTCCCAATCAAATTCAAATTTCTCTACACGCGATACCCTAACTCTAATTCCATGTGAGCAAGTTTCCACAATTTCCGTTGTATTTTTTTCCTTTCGATCCCTCTGTTTCTTATACGTTGATCCTCTTTTTGCAGATCTCGAGATGAAAGGAGCTCAGTCCAAGTCCACTAAAGCCGACACCAAGTATTCAATTTTTCCTTATTATATGCTTATTTTGATATTTTGACCTTTATTAACAATTTTGATGATCTAGGTGTTAGATTTAGGCGTTTGGAAATCAAATTGTATTTTGCAAGCTATGATTTAGAGCTGATTGCGAGTTTATTAATATTTTATATCATTGATAATTTACTCTAGTTTGAAACTTATTATGTATCCCGATTTGCTGACTATAAACCACATATCTTACCAACTTTCAGATCTGCTATTTCTGATGTTACACAATTTAGCTAGACTTTGCTATTTGGATGTTTATTTTACTACAATTGTGCTTGATTATTTGAATTTTTTATTTAATTACTGATATTCATGTATTGCTATTTTGTTATTCCTTGATTGAAGGTTATCTGTGAAGAAGAAGATTGATAAAAAGGCCAAGGATCCTAACAAGCCTAAAAGGCCTCCGAGTGCTTTCTTTGTTTTTATGTAAGTGTGATTTGGAAATTGTTTGGTTATTTGTTGGATTAAGTTGCTACTTGATAATGCACTATGATTAAGTAGATTAATCCCTTAGATCTAATTAATTATGTTCATGCTTTTGGGTTGTACATCATGTGAATTATCAGCGAGGTTTTGTTGCATGGTTCTTGTGTTTATTTATGCATCTGTTTTTAGTCCAATATGAAAGTTCTATTGATATATTATGATTTATTTGCTGTTCAAAGTATTGATAAATGATAATAAATCCACCAGTGTAATATCTAACTTACATCATTTGTTTTTGTTCTAATGGAAGTGATAAACCTTCGCGATGTGATCTATCTCACTATTGAGCACTTCGTTAGAACTGAGGAAAAAAATTGATCTAAAAGGAGCCATTCCTATCATACTACCTCATTCATCTGTTATAGTTACCAGATTATGTTATCTATTATTGCAACTGGTCATAATGTTAAGTTGTTTGATAGAGTAATCAAAGGTCATGTATTTTATATTATGGCCGCATTACAAAAAATGTTGGCTAGTAGGGTGATACTTTGATACGGTTGTTTGAGAGTAATAAAAGTACTTTAAATTCAATAAGTAATACTTCTCTTTTACATGCCTGTGTCTGTTTTCTTTTTGATCTAACATGATAGATATTAGCACTTTGCATTTTCTTTCTAGTTGTATATTCTTGAACCAGAATGCCTGTTTTGTATGATTTCTTTTCTTTGGGTTAATAGACAGACAAAGTAGTGCAGATTTCTTGGCTATTTTCTCTCTTCTCTTTCTTGGTGTTTTGCAGGAAGGATAAGCACATGATATACTCATGTGATACTGCATGCATTGATCGAGAGTCTATAACTTGTAGGATTACAATTCTAATGCAGCTATTTATATTTTCAATTTATAGGGATGAGTTCAGAAAGCAATTCAAGGAGGAAAATCCTGACAACAAACTTGTCTCTCTTGTAAGCAAACGAGTCTGTTTGATTTTTCCTATTAGTTCAATGATTATAATTTTGTGTCTTTCTGAACAGGTTAGCAAAGCTGGTGGAAAAAAGTGGAAGTCCATGTCTAATGCTGTGAGGGACTTGTTCATCATTTCTTTTTTTGCTTTGGATATAAAATCTTGCTCCCAATTTAATTTCTAGGATTTTATTAAAATGTTTAAATTGTAGGATAAGGCTCCTTATGCTGCTAGGGCAGAGAAATTCAAGGCTGAGTATGTAAAGAAGATGAGTGCATATGAGAAAGGGGAGCTTAAGGTATAGATATGATATTTTATGTTTTGCAGTATTTCTGCTGTTTTGGATTTATAAACGATTCACTTTATTTCAGAAACCTAATTTTAGTGACTGTTCATTTTGTTGAACAGAACGAGGAAGAGGACTTTGAGAAGTCCAAGTCTGAAGTGAATGATGGAGAATCTGAGGTAAAACATGCAGTTTAATTCTTAAGCTAAATGATGATCTGATGTTGTTTAAAATACCATAGCAAGAAGTACCACGCTTTACTATGACTCGAACTCCTATTCTAAGCTCAGTAGTGCAAAGGGGACAACTAAATCTCTTAGAAATGTATTATGTCGGAGAGTATTAAGTGGGTCACATGTATGAGATCCATACATTGGCCGCTAATTGCATAAAAACTCCTCACTTTATCTTTTTAACATGCAAGGATTGTAATTTTAAGTAGAAAGCATCTTGTTCGATCCTAAGATATTTGCGGGAGGCTAGCCAGGAATATTTTGACCTTATAATATAACTCCTGTTTGCTGTATATTTGATTTTTGTTTTTGTTGCCTGGGATGTCTAACAAGTCTATGTATAAAGAAATAAAATAATTGTTTTGCATACGTAAACAACTTTACCCTATTTATGATACTAATGTGTTTTTTTTTTCTGTATTTCTAGGAAGGAGATGAAGCTTAAATCTAGGCTGGTAGCAACGTATTGCAGGGGGGCATTGGTTTTTGCTGCCTTGTTTATCTCTTTAAGTCCTTTTATTCAAGGAATAACCGATAGATTTTAATAGCTTTATAGAAAGTAAAGTTACAGACATCTGTGTATGTACCTGAAATGCTATGTTCTTATACATATTTGCTTGTTCACTGTATTTCTGAAATATATGTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242784.1	3.7e-25	HMG1/2-like protein
Swissprot	P26585.1	3.4e-20	Protein SB11
trEMBL	A0A453LKH0	3.2e-23	HMG box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20696.3	48.61	7e-23	103	HMGB3;NFD03;NFD3	high mobility group B3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G04109	AT1G20696.3	144	44	4	68	204	15	135	48.61	7e-23	103
AfisC7G04109	AT3G51880.2	125	40	2	79	203	48	148	48.80	1e-22	102
AfisC7G04109	AT2G17560.3	152	55	4	55	203	15	134	40.79	2e-22	102

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	84	118	36.2	5.3e-09
PF00505.16	HMG_box	Domain	136	176	33.2	4.8e-08

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000741	P	karyogamy
GO:0000785	C	chromatin
GO:0001819	P	positive regulation of cytokine production
GO:0001932	P	regulation of protein phosphorylation
GO:0002224	P	toll-like receptor signaling pathway
GO:0006333	P	chromatin assembly or disassembly
GO:0006281	P	DNA repair
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0007166	P	cell surface receptor signaling pathway
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0042981	P	regulation of apoptotic process
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0070887	P	cellular response to chemical stimulus
GO:0030154	P	cell differentiation
GO:0030334	P	regulation of cell migration
GO:0031981	C	nuclear lumen
GO:0032270	P	positive regulation of cellular protein metabolic process
GO:0034097	P	response to cytokine
GO:0042592	P	homeostatic process
GO:0043542	P	endothelial cell migration
GO:0043566	F	structure-specific DNA binding
GO:0044093	P	positive regulation of molecular function
GO:0044444	C	cytoplasmic part
GO:0044765	P	single-organism transport
GO:0048731	P	system development
GO:0051223	P	regulation of protein transport
GO:0051271	P	negative regulation of cellular component movement
GO:0065003	P	macromolecular complex assembly
GO:0071103	P	DNA conformation change
GO:1902533	P	positive regulation of intracellular signal transduction
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network