result

Gene information

Detail information of AfisC7G04444

Location

Gene	Chr	Start	End	Strand
AfisC7G04444	chr7	822789266	822791534	+

Sequences

CDS

Protein

Gene

>AfisC7G04444
ATAATTATATAATTTAATGGGCGAATTTAATCAAGCTGTAATTCCCTTGTCTGATCCGGATCTGGGAAGAGTGTCGGACCCGATAGATGCTCATAAGGTGAGACTCGTCAGAAGATCCTATTTTTTTCTGCTCTTTTTTTTTAGTTGTCTCAGTTAACAATCTCTTGTATTTATTTTGAGATTTCTTTTCTATTAATGATGTTATGTTGAATCTAGTTATTTGTTAGAGAAAGCCATTTTATATGCTTATTTGACTAGCGGTTTGTTCCATTTGATATGTGATAATCACATGAAAAAAAATATAAAAATCTGGATGGATAGCTTTGATTGAAAATCAGTGGCCGTATAGTTTTTTTTTCTTTTTCTTTTCCCTTTTTCCCCTTTTTATTTCTAAAAGCTTCAACTGACCTAAGTTTGCGTGAGGGCAAAGCTAGCTAGATTATTATTTTTTTGTCAAAATGAACCTTTAGGCTGATTTTTAGTTCATCAAATCCTATACAGGCTTATAAGTATGAACGAAATGATTATAAATCATAGAATATGGATACAGAAGTTTATACATCTATCTAGAAGGTTGAATCCATGATATTTTTATGGTTTCATGACATTTTATTCACCGATTTTGCTTTAACTATATTAATTCATCATGTTTTTATAAAGAATAGCTCATTTTAATGGGTTTGAGAACAAAAGGTGTGAGCAAACAGGCTTTGGTTCAGCAAATTATTTTCTATAAACAAAGCGTAATATACAAATTTATCATCACTTATAAGCCACTTTAGAATGCATACTACTTTTTCTTGAAATTTTATTTTGACAACTAAAACACCAATGCATATTCTTGCAAGACAACTTTCTATTGGAAAGTATGCTAAATTATTAGTGGTAAGTTGCCAATGGTGCCCAACACAAATTAAAATACACACCCCCACTGCATTTGTATCATGCATAATCAGGCCAGCTGAACATTATAATCTAACTGGTTACAGGAAATATTGACAAGGACAAGGCTTGTTTCATAAATTACATTAGAAATCCCAATTGCTTACACTTGGCTATTTTCCTTGTGGATGTGGATCCAGAGATAGACTTGCATATGAATTTATATTGGCTTCCATGCTTTTATTTGGTCCATGTCTGTCAACTAATTGATGTACATCTAAAACAACTATTTGACCCATCTATATTAACTGTTTATTTGGTCGATACATATATCTAAAACAATTTTGCATATCAACTGATTTTCCTCGTATGTTTATAGGACAATCTACATGCAAAAACCAAAGTTCAGAAACTACTAGTCTCCAATTCTTCAAATGTGAACAATGCAAGTAACAATGAAGAACTGTCTACAGATCCCAACACCAAGCAAGACCATAAACCAAATGAAATCCTTCCATGCCCTCGCTGCAAAAGCAAGAACACCAAATTCTGCTACTTCAACAACCAAAACATCAACCAACCTCGACACTTCTGCAAGAACTGTCAAAGGTATTGGACTTCAGGTGGGTCAATGAGAAACGTCCCCGTAGGCTCAGGCAAGCGAAAATCAAAGCATTCGATCAATCATCTGTCCATAGAACAAAATAACAAAAAGCCCTTCAATCCAGTTTTAATTTCACCTACTCATGAAATCGTTGACACTCCTAGCAGTAGTGTCGAACCTCATAGTCATAACCCAGAAGCTTGTTTTTCTCCTCAAGGCCCAGAAGCTTGTTTTTCTCCTCAAGGCTACCCGGGCCTTCCTTGGGCTTACTCATGGGCTCCTCCTATGATGATGGCACCACCTTCGAATATTCCCTTTCAGTTTGTTCCGATGTTTCCAGTGTTTCCTGATATGTCAAATACGGTGAATCATTGTGAGGGAAAGAAGGAAGAAGAGAGGAAGACTATTTGGGCTCCTAAAACTTTGAGAGTTGATAATCCTGAAGAGGCAGCGAAGAGCTCTATATGGTCTACACTGGGAATAAAGAGAGACGAGTCTGTCAAAAGAGACTGGTTATTTAGAGGTTTTCAGTCTAGTAATGAAAGCAGTGGTTATAATGCATCAAATTCTACTAAGGTATCGCATTTGAACCCTGCTGCCATGGCTAGAAGTCAGCTATTTCAGGAGAGGGCGTAAAGTAATGTATGATTAATGTACTGTAGAAGCTTCTTGTGTTGTATTTTGACAGTGTAGACAGATGTTAGCTGTTTAATAGTATGCTAAAGCATTGGACATATTTTTGGTGTTTATTTGTAAGCTATGTCACTGCGAACTTAACTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31850.1	5.3e-100	cycling dof factor 3, partial
Swissprot	Q8LFV3.2	4.4e-35	H-protein promoter-binding factor 2a
trEMBL	A0A291FGD0	3.8e-100	Cycling dof factor 3 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62430.1	36.27	2e-38	156	CDF1	cycling DOF factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G04444	AT5G62430.1	284	108	10	67	312	49	297	36.27	2e-38	156
AfisC7G04444	AT1G69570.1	278	137	10	67	311	127	395	35.61	1e-34	143
AfisC7G04444	AT3G47500.1	73	21	0	58	130	96	168	71.23	3e-28	122

Ortholog group

Species	Genes
Allium cepa	g93653.t1
Allium fistulosum	AfisC7G04444
Allium sativum	Asa3G01470.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	71	126	105.7	8.9e-31

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0009908	P	flower development
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process
GO:1902455	P	negative regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network