result

Gene information

Detail information of AfisC7G04477

Location

Gene	Chr	Start	End	Strand
AfisC7G04477	chr7	827884171	827888575	-

Sequences

CDS

>AfisC7G04477
ATGGCATCATCCTCTTCTACCTTCCTTTATCTCTTTCATCATCCTCCCACCTCTTCCTTCATCAACTCCACTCTTTCCTCTCAAGAGGAAGAAGACCTCTTCAATCTTTGCTACTCTCAAAATCTTAAATCATTTCATTATAATTCCCCAGAAACCACTAGAATGGTTCGCAAAAGACCCATTTCCGAAATCTCATCCAACCCAATCCCTCCTCCTCCTACTACCCATCAACCCATTTGCGACTTTTCGGGTCTTCCCCTTTTCGTTGCGCCAACAGAACCGGTTCCGATACAAAGCAGCACCATCCCCATTGAAAGCGGTAACCTTACCACCATCAACGCAAACCTTAACACAAACAATAACATATCTGTCGATGCAATCATAAGAGACCTCATCAACAACGCTTCGCCTGAGGTGACCATACCGCAGATCATTCAAAACGTCCGAGATATCATCCATCCGTGCAACCCAGGTTTAGCCAGCGTTCTCGAAAACCGCCTTCGCGGTTTGATTTCCGATCTCCCTCCTACCGGTGGGGCGCCGGAACCCTCTAACAAGAGAAGAAGGGAAGGCGACCATACCACAGAAATCGCGGTCGAGTTACCTCCGCCACAACCACAAACTAATAATAACGACAATGCCTCAACTTCCACATCGCAGCAGCAGAAAAGCACGAATGATAACCAAGAGATGAACCGAAAGCAGAAGAGAGACGAAGAGGGACTACATCTCCTAACTCTTCTCCTACAATGCGCAGAAACAGTGGCATCCGAAAATCTAGTGGAAGCAAACAAATTACTTTTAGAAATTTCGGAGCTTTCAACTCCGTACGGCACTTCAGCGCAAAGAGTGGCAGCTTATTTTTCAGAAGCAATGTCAGCAAGGTTAGTCAATTCGTGTTTGGGGATATCCGCAGCTCTCCCTATAATCCCACATCGTCAGAAACTAGCTTCCGCCTTCCAAATATTCAATGGCATCAGCCCGTTCGTAAAGTTTTCTCATTTCACATCAAACCAAGCGATCCAAGAAGCGTTTGAGAGAGAAGAGAATGTTCACATTATAGATCTGGACATAATGCAGGGACTTCAATGGCCCGGACTGTTTCACATACTCGCTTCAAGGCCCGGCGGCCCGCCCAGAGTGAGACTGACAGGTCTGGGGAACTCGACGGAGGCACTAGAGGCGACGGGGAAGAGATTGAGTGATTTCGCGGAGACCTTAGGGTTGAGTTTTGAGTATGTTGCTATTAATGGAAAGATTGGGAATTTAGACGTGGAGAGATTAGGAATTAGAAGGAGGGAAGCTGTAGCTGTGCATTGGTTGCATCATTCTTTGTATGATGTTACTGGGTCTGATGGTAGTACACTCAAGCTGCTGCAAAGGTTAAATCCGAAGGTGATAACAATAGTAGAGCAAGACCTAACTCAAACGGGATCATTTCTAAACCGATTTGTAGAAGCAATCCACTATTATTCAGCACTATTCGACTCTCTAGGAGCAAGCTACGGAGAAGACAACAATGACCGACACATTGTTGAACAGCAGCTCCTATCTCGCGAAATACGAAATGTGCTAGCAGTAGGTGGGCCAGCCCGAACTGGGGAGGACAAAGTTGGAATGTGGCGTGAAAAGCTCAGCCGCTCGGGCTTCAGAAGCATTTCTCTAGGAGGCAATGCAGCTGCACAAGCTACCCTCTTACTAGGCATGTTCCCTTCCGATGGGTACACCCTTGTTGAAGAGAAAGGTACCCTAAAGCTTGGATGGAAAGATCTTTGTTTGCTCACCGCTTCAGCTTGGAAGCCCATGTATTCTACTCCTAATGCTTATCTTAGTGCAACTCATGGTTAA

Protein

Gene

>AfisC7G04477
CCAAATTTCAAATAACCGCTTACTATATAGTTACTTGCTAATAGCAATTTTCCCTTTGTTATTTTGTTTTTGTTGTGATGGCATCATCCTCTTCTACCTTCCTTTATCTCTTTCATCATCCTCCCACCTCTTCCTTCATCAACTCCACTCTTTCCTCTCAAGAGGAAGAAGACCTCTTCAATCTTTGCTACTCTCAAAATCTTAAATCATTTCATTATAATTCCCCAGAAACCACTAGAATGGTTCGCAAAAGACCCATTTCCGAAATCTCATCCAACCCAATCCCTCCTCCTCCTACTACCCATCAACCCATTTGCGACTTTTCGGGTCTTCCCCTTTTCGTTGCGCCAACAGAACCGGTTCCGATACAAAGCAGCACCATCCCCATTGAAAGCGGTAACCTTACCACCATCAACGCAAACCTTAACACAAACAATAACATATCTGTCGATGCAATCATAAGAGACCTCATCAACAACGCTTCGCCTGAGGTGACCATACCGCAGATCATTCAAAACGTCCGAGATATCATCCATCCGTGCAACCCAGGTTTAGCCAGCGTTCTCGAAAACCGCCTTCGCGGTTTGATTTCCGATCTCCCTCCTACCGGTGGGGCGCCGGAACCCTCTAACAAGAGAAGAAGGGAAGGCGACCATACCACAGAAATCGCGGTCGAGTTACCTCCGCCACAACCACAAACTAATAATAACGACAATGCCTCAACTTCCACATCGCAGCAGCAGAAAAGCACGAATGATAACCAAGAGATGAACCGAAAGCAGAAGAGAGACGAAGAGGGACTACATCTCCTAACTCTTCTCCTACAATGCGCAGAAACAGTGGCATCCGAAAATCTAGTGGAAGCAAACAAATTACTTTTAGAAATTTCGGAGCTTTCAACTCCGTACGGCACTTCAGCGCAAAGAGTGGCAGCTTATTTTTCAGAAGCAATGTCAGCAAGGTTAGTCAATTCGTGTTTGGGGATATCCGCAGCTCTCCCTATAATCCCACATCGTCAGAAACTAGCTTCCGCCTTCCAAATATTCAATGGCATCAGCCCGTTCGTAAAGTTTTCTCATTTCACATCAAACCAAGCGATCCAAGAAGCGTTTGAGAGAGAAGAGAATGTTCACATTATAGATCTGGACATAATGCAGGGACTTCAATGGCCCGGACTGTTTCACATACTCGCTTCAAGGCCCGGCGGCCCGCCCAGAGTGAGACTGACAGGTCTGGGGAACTCGACGGAGGCACTAGAGGCGACGGGGAAGAGATTGAGTGATTTCGCGGAGACCTTAGGGTTGAGTTTTGAGTATGTTGCTATTAATGGAAAGATTGGGAATTTAGACGTGGAGAGATTAGGAATTAGAAGGAGGGAAGCTGTAGCTGTGCATTGGTTGCATCATTCTTTGTATGATGTTACTGGGTCTGATGGTAGTACACTCAAGCTGCTGCAAAGGTAAAAATTAAATTTTGTTCTTTGTTTTCTTTTGTTATTATGATTGACGTTTGGTTATTGCCATTGCTTTTTGTTCTTATTGTGCTTTGATGTGAATGAATTGGTTTAGCATATTTGGTTGTGAAATTTAGGGTTTGTTTCTGTTGTTGGTCTGGTAATTTTTTTAAAAGATAAGTTTATCTAAGAATTATTGTCATCTCGATTCATATATAGATAAATCCAAGCATAACTTCTAGTTTTGTTAGTACCTACATTATCCACTATTTAACATTGGTGTTTTGTTTATCTTCTTTGTTTGAGTGAACAAAATTGCACTAGTAAAATTGGTATTGCTTTGACCTTTAGTGCCTAGTTCATGTCACATATAATATAAGAAGAAAGCTTAAGAAATGTTTATAATAGCTGGGTAATGAAGATGTATTTGACTCTTGGCACCTTTGCTTTGAAATGTAAAACATGGACTTCATTTCGAGATTCTGATTCCTTTTCCATAACTAGCTCTAGAAACTGGCTAGGTTAAAAGATCGGTTGGCAATGTATATAATGGCTTCGAACTTTGTACGATGAAATATATATTATATACTAATAATTATGTTTTAGTTTAAAAAGGAGAAAAGCTGGCGATAGGTAAAGACTATCTCTTGGGTAATGATGTTCCTTTTCCTTCTTTCTTGCTTTCTAACTACATTGCCTTTATTGTGATTGTCTTGAGACCTGAGAAGTGAAAAGGGTTTCATCTTTTTTGAAGATTTTGGGGAAATAAAGTATTGATTGTTTATTCATAACTTTGAGCCTCACTTTTCTTTCAATGCTAATCTTTTTGCAGTAGGTCGTATTTGCATGAGCCTTTTCATTATCTGCCTCCAAGCTGCCCTTATTATTTTTAACATACAGTATTGTCTCATTTAATATTACTAACTTTGTTTTATTAATTTTATATGATTAAATTCATGTGTATGCTCAACTTGGGTAAAGGTGAACCAACAGTATTTCCACTATTTTCACGAACTATGTATTGTAGGACAAAATTTGGTAATTGATGCCTCATATGAAATTTAAGACCTTGGATCACATTGTAATATTTTTCTTCTTACCCAATGGTTATTTGTTCTATAAACCATGTTTAGCTATGTATTTTGTAATCACACTTGTATCGTTAACCTTAGCGTTTTGTTCTCTTTCTTTCTTCCAAAATGCTAAAAGACACCCAACGGTTGAATACATGTTCATACTTGAATTGCAATTCTTAATTACACAAAATTATGTCTGTAAATTTTACTCCAGCATATTTCAGTTTTCCTTTATATAAACTATTGTAGTATGATTTACATAATTTATTCTTTAACTCTTTCTCTAACAATGAACATTTTGTTTTCTTTACTTCAAAACAATGATTTCACTGCACTGCAACACATGTCTTGACAACCCATACGTATACATGAATATTATTATTGATAGGGCCTATGTAGAATGTTCATATTTGACTTGCACGGTTTCAACTATTAATTAACTCAATTTGCATTTATAGCTTCATTGTGACATTTGTCCTTTTTCTTATATCACTAACGTTATTAGACATAACAACAAGACAATTTGCCTTGACAAACACCTATTATCAATGAAGATTGTTTAAAGATGACATATGTGAATATTTCACTAGTAATGCATGGTTGACTCCTATGTACATTGTTAACACCCATAACTCCGATTTTTGTAAATAAATTCTTTATGCAAACATCATTATGAATCTGGGATCAAGTTGTATGTATAACTTTGATGAACTGGTGCAAGTTTTTTGAACTGTATGAGTTGTACTATCATATACAATGTAAATTTTTTATAATTTCAGAGATCAAGGTTAAATCTTTAACAAATGCAGGTTAAATCCGAAGGTGATAACAATAGTAGAGCAAGACCTAACTCAAACGGGATCATTTCTAAACCGATTTGTAGAAGCAATCCACTATTATTCAGCACTATTCGACTCTCTAGGAGCAAGCTACGGAGAAGACAACAATGACCGACACATTGTTGAACAGCAGCTCCTATCTCGCGAAATACGAAATGTGCTAGCAGTAGGTGGGCCAGCCCGAACTGGGGAGGACAAAGTTGGAATGTGGCGTGAAAAGCTCAGCCGCTCGGGCTTCAGAAGCATTTCTCTAGGAGGCAATGCAGCTGCACAAGCTACCCTCTTACTAGGCATGTTCCCTTCCGATGGGTACACCCTTGTTGAAGAGAAAGGTACCCTAAAGCTTGGATGGAAAGATCTTTGTTTGCTCACCGCTTCAGCTTGGAAGCCCATGTATTCTACTCCTAATGCTTATCTTAGTGCAACTCATGGTTAACCCTTTGGCCTAAATGTGATGAGAAAGCAGTTTCATGAAAAGCAGTTTTGTATTTGGGTAAGTATTTTTTATTTTTATTTTTTAAATTTAAGTTGGAGTCTCATTACTTGTTCTTTTGTTCTAATATAATATGCACATTTTGTGATATCACTATTGCTTTTTATGAAAAGTTGCTTTGGTTTTGGTTTTATTGCCATCGATAGGTCAATTTTGTTTCCCTTGTATCTTTAGCCTGTCCTTACGTTTTTATGTCAAGTCACAAGCTTGCTAAAGAATGTAGGTTTCTTGCTGTTTTCTTTTGCCAGAGGAAAGAGAAAATTTTAGGTTTTGGCAGCTACTTTAGGGAAGAGTGCTTTGATGTTCAAAGATGAATTGTGGATGCAATTTTTGATATGGCCTAGCTTGTTTCAAACTTTCAGACCATCTGCTGTAGATTGTTTAACTTCTTCCTTTATTACTCGATGCTTTTAAGTTGGAAGTTTAAGAAGTTATTGTAGTTTAATGTTGTTTCAAATATGTTCCAATCACCACTTCTTTGCTTTGTGTGTTTATAGAAAATATGTCTTCATTAATAAATTGGATACAGGTAATTTTTAACCCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010931426.1	9.2e-189	protein SCARECROW 2
Swissprot	Q9M384.1	8.1e-174	Protein SHOOT GRAVITROPISM 1
trEMBL	A0A6I9S0T1	6.6e-189	protein SCARECROW 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G54220.1	74.44	1e-171	600	SCR;SGR1	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G04477	AT3G54220.1	403	98	3	203	601	250	651	74.44	1e-171	600
AfisC7G04477	AT5G41920.1	393	160	5	224	600	12	400	54.20	1e-114	410
AfisC7G04477	AT1G14920.1	376	211	12	239	600	164	529	37.50	2e-61	233

Ortholog group

Species	Genes
Allium cepa	g529529.t1; g529530.t1
Allium fistulosum	AfisC7G04477
Allium sativum	Asa3G01451.1
Arabidopsis thaliana	AT3G54220.1
Oryza sativa	LOC_Os11g03110.1; LOC_Os12g02870.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	245	600	398.3	2.8e-119

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008356	P	asymmetric cell division
GO:0009536	C	plastid
GO:0009630	P	gravitropism
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0009956	P	radial pattern formation
GO:0042538	P	hyperosmotic salinity response
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051457	P	maintenance of protein location in nucleus
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090610	P	bundle sheath cell fate specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network