result

Gene information

Detail information of AfisC7G04696

Location

Gene	Chr	Start	End	Strand
AfisC7G04696	chr7	863252275	863254735	+

Sequences

CDS

>AfisC7G04696
ATGGGCACTGGATCTGGGAATAATAATACGCAGTTATTAGGCATACCACAGTCTTCTAATACTAGTCCAGATGATTCTGCGGTTTACACTGATGTTTCATTCAATCACATAAGTCAAATGCTCATGAATGACAACATTACTATTGATGATTTCTTCGATGATAGTTTTAATGGAGCTCCCTATCGCGATGAAACCGAGAAATCCTTTTATGAAATGCTTGAAAACAACTATTTACCACTGCCAATTTACTCACAACCCGAATCAAATCTCAGTAGTCTTGGAATCGCTAGTACTGCACATCAAAATGTGGATAAATGTAATTCAGAGGCCACTACTAGTGATGTGGTTATAGACTATAACTGGCCATATGATTATTCAGAGTACCATTTACCCCTCGAATTCAGTAATCAATCATATAATGGTGTTGCAAGTAGCAATATTGTAGGCGATGGTTATCATGGGTTTTCCAATTTGTTCCTTCAAAACTCCCCTCCTTTACGTTTTAATGGTGGGCTTGAAGAAGCAAATAAATTTCTACCCAGTGATGTTAATCTAGTAATGGATGATTTTAACCCCTCAGTAGTAAAATCGAACGAAGTAAATAAGGTGCGCAAAACCCCACATAGTAACGTTTTAGATTTAAACAACGGTAGAAGCGTCAAGCAATCCATAGTTTTATCAGATGAAAACGTAAGATCAAAAATGTTAGATGAGGTATTGCTTTGCTATGGCGGTAAATTCTCAGAAGCTCTCGACGCTATTCGAGAAAGACTCCATCACGCAACACTCACAAACTCGAAAAATAAAAAGAAACGAGGGAAAAGACAATCGAAAGAAGAAGAAATAATCGACCTACCAAGTCTACTCATCCAATGCGCTCACACCATCACCACAGGCGACCAAAGTGGAACCTACTCGCTTCTCCAACAAATAAGGAAACACTCCTCCCATCTTGGGTCCGGGTCCCAAAGACTGGCGCACTACTTCGCAAACGGGCTTGAAGCCCGCCTAGCCGGCAACGGAAGCGAGATCTACAGCTCTTATGGCATTTCACGTAGGTTGACCTCCGACTTACTAAAGGGATATCGACTCTACCTTGCCGCTTGCCCTTTCAAGAATATTTCACGGTTCTTTTCGAACCAAACCATACTCGACTTGTGTGAGAACGCAACGAGCGTGCACATTGTCGACTTAGGGATCAACTTTGGGTTCCAATGGCCCTCCCTCATCCAACGCTTCTCCGCTAGGCCCGGGGGCCCGCCAAAGGTCCGTATCACTGGGATTGACGTCCCTCAACCCGGGTTCCGGCCTGATGAGAGGATTCAGGAAACGGGCCTTAGGCTCATTGACTATGCTAGTAGCTTCAACGTTCCCTTCGAATATAATGCTATTGCGTCGAAATGGGAAGATGTTGAGATTGAGACCCTCGACTTAAGAGAAAATGAGGTTTTGATAGTGAATTGCTTGTACCAAATGAGGTGGCTTGCGGATGAGACTTTGGTGGTCGACCCGAATACAAAATCTCCGAGGAACGTCATGCTTGAGAAGATAAGGAAGATGAAGCCTTGTATTTTTATTCATGGAATTGTTAACGGGTCTTACGGGGCTCCGTTTTTCATGACGAGGTTTAGAGAGGCGATGTATCATTTTTCGGCGTTGTTCGATTTGCTTGAAACGACTGTACCACGAGAGGATGAGCAAAGAGAGTTGATAGAGAGGGAGGTGTTTGGAAGAGAGGCTTTGAATGTGATTGCTTGTGAAGGGATGGAGAGAGTGGAGAGGCCTGAGACTTATAAGCAGTGGCAGGTCAGGAATATGAGAGCCGGGTTTGTGCAGCATCCGATAAACAGGAATATGATGAAGAAAGCGAGGGATAAGGTTAAAAGCTTTTACCATAAGGATTTTGATGTGGATGAGAATGGGAGATGGTTGCTTCAGGGCTGGAAGGGTAGAACTGTCTATGCACTTTCATCCTGGAAACCTAATTAG

Protein

Gene

>AfisC7G04696
CACATGCTTTGATTTCGTACTTTATCTCCCCTCCCCACACAAGGTACGATTCTTTCCCCAATTCAATCTCTAGCTCTTTATTCTTCTGAAGTAAAATCATGGTGTATTTATTTCTTCATCGAGTTTTCTCATTAGCTGCTTCTTCAACTTCTTCCCTGTTCAAGTTGGATTATTTACAGCAAAATCACAGTATTTAGGTCAATATATTTATTTTTTACTTCAAAATCACTGTTTTGATTTGAGTCTTGTTAAATTTTGAATGTATGGGCACTGGATCTGGGAATAATAATACGCAGTTATTAGGCATACCACAGTCTTCTAATACTAGTCCAGATGATTCTGCGGTTTACACTGATGTTTCATTCAATCACATAAGTCAAATGCTCATGAATGACAACATTACTATTGATGATTTCTTCGATGATAGTTTTAATGGAGCTCCCTATCGCGATGAAACCGAGAAATCCTTTTATGAAATGCTTGAAAACAACTATTTACCACTGCCAATTTACTCACAACCCGAATCAAATCTCAGTAGTCTTGGAATCGCTAGTACTGCACATCAAAATGTGGATAAATGTAATTCAGAGGCCACTACTAGTGATGTGGTTATAGACTATAACTGGCCATATGATTATTCAGAGTACCATTTACCCCTCGAATTCAGTAATCAATCATATAATGGTGTTGCAAGTAGCAATATTGTAGGCGATGGTTATCATGGGTTTTCCAATTTGTTCCTTCAAAACTCCCCTCCTTTACGTTTTAATGGTGGGCTTGAAGAAGCAAATAAATTTCTACCCAGTGATGTTAATCTAGTAATGGATGATTTTAACCCCTCAGTAGTAAAATCGAACGAAGTAAATAAGGTGCGCAAAACCCCACATAGTAACGTTTTAGATTTAAACAACGGTAGAAGCGTCAAGCAATCCATAGTTTTATCAGATGAAAACGTAAGATCAAAAATGTTAGATGAGGTATTGCTTTGCTATGGCGGTAAATTCTCAGAAGCTCTCGACGCTATTCGAGAAAGACTCCATCACGCAACACTCACAAACTCGAAAAATAAAAAGAAACGAGGGAAAAGACAATCGAAAGAAGAAGAAATAATCGACCTACCAAGTCTACTCATCCAATGCGCTCACACCATCACCACAGGCGACCAAAGTGGAACCTACTCGCTTCTCCAACAAATAAGGAAACACTCCTCCCATCTTGGGTCCGGGTCCCAAAGACTGGCGCACTACTTCGCAAACGGGCTTGAAGCCCGCCTAGCCGGCAACGGAAGCGAGATCTACAGCTCTTATGGCATTTCACGTAGGTTGACCTCCGACTTACTAAAGGGATATCGACTCTACCTTGCCGCTTGCCCTTTCAAGAATATTTCACGGTTCTTTTCGAACCAAACCATACTCGACTTGTGTGAGAACGCAACGAGCGTGCACATTGTCGACTTAGGGATCAACTTTGGGTTCCAATGGCCCTCCCTCATCCAACGCTTCTCCGCTAGGCCCGGGGGCCCGCCAAAGGTCCGTATCACTGGGATTGACGTCCCTCAACCCGGGTTCCGGCCTGATGAGAGGATTCAGGAAACGGGCCTTAGGCTCATTGACTATGCTAGTAGCTTCAACGTTCCCTTCGAATATAATGCTATTGCGTCGAAATGGGAAGATGTTGAGATTGAGACCCTCGACTTAAGAGAAAATGAGGTTTTGATAGTGAATTGCTTGTACCAAATGAGGTGGCTTGCGGATGAGACTTTGGTGGTCGACCCGAATACAAAATCTCCGAGGAACGTCATGCTTGAGAAGATAAGGAAGATGAAGCCTTGTATTTTTATTCATGGAATTGTTAACGGGTCTTACGGGGCTCCGTTTTTCATGACGAGGTTTAGAGAGGCGATGTATCATTTTTCGGCGTTGTTCGATTTGCTTGAAACGACTGTACCACGAGAGGATGAGCAAAGAGAGTTGATAGAGAGGGAGGTGTTTGGAAGAGAGGCTTTGAATGTGATTGCTTGTGAAGGGATGGAGAGAGTGGAGAGGCCTGAGACTTATAAGCAGTGGCAGGTCAGGAATATGAGAGCCGGGTTTGTGCAGCATCCGATAAACAGGAATATGATGAAGAAAGCGAGGGATAAGGTTAAAAGCTTTTACCATAAGGATTTTGATGTGGATGAGAATGGGAGATGGTTGCTTCAGGGCTGGAAGGGTAGAACTGTCTATGCACTTTCATCCTGGAAACCTAATTAGATGATGCATTGCAGTAAGTGAACAAATATGATGTACATGTTTATAGTACAATGCATGCTTGAGGCTGTGTTATTTAAATATTTGTTTGTATTTTTAATTCCTTTTGTTACTCTGATATTGTATGTCTTTGCAGTAAGTTTTGCTTGGTTTTTTCTTTTGAAGTTCCACTTGTGTATATGTGTAATTTGATAATGCATGTAAGGATGCAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	2.1e-191	scarecrow-like protein 9
Swissprot	O80933.1	1.0e-137	GRAS family protein 13
trEMBL	A0A5P1FEW5	1.5e-191	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G37650.1	43.43	5e-144	508		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G04696	AT2G37650.1	670	322	14	23	661	71	714	43.43	5e-144	508
AfisC7G04696	AT2G29060.1	692	358	17	1	661	20	693	41.18	3e-138	489
AfisC7G04696	AT1G07530.1	560	261	9	145	662	212	767	45.18	8e-138	488

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	287	660	360.5	8.4e-108

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003723	F	RNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0010200	P	response to chitin
GO:0030154	P	cell differentiation
GO:0044434	C	chloroplast part
GO:0048367	P	shoot system development
GO:0048519	P	negative regulation of biological process
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network