result

Gene information

Detail information of AfisC7G05163

Location

Gene	Chr	Start	End	Strand
AfisC7G05163	chr7	940933002	940935596	+

Sequences

CDS

>AfisC7G05163
ATGGCGATTAGAGCCTTACATGGACGCCATTTTCTCCAAATTACACTTAAATCCTTACTGAAAATCCAATCTCTCTCAACAACCCCAACTCATATAGCAAAAGTTTCATCCCAAACACTAGAAACCAGTGAATCCAGTACCCAAGTGTCAATTGCGAGCACGTTGCAAAGGTATGGCTTCCCCCAATCTCAAACCCACGAATTCATCGAAAAGAATCGTTTTTTATCGGCTACATCATCTGCTAATATTGACAGTTGCATCAACTCTTTGTTACAGTTTGGTATTCCACAAAATGATTTGGCTTTGTTGTTAATTAGTTGCCCTAAAGTTTTAGAACTAGAATTTCTGAACGAATGGAAAATGGCCTTATCAAAACTTGAATCCTGTAGCACATCCGTAATTATAACGATTATTGAACATGCTGCAAAGTTCCATATTGAACCGAATTATTTTTCTAGAAATGTGGAAATAATGAAGGAAAATTTTGGTCTTTCCGATAAAACACTAATTAGTGTTTTTGAAGTATCACCCACTGCATTCATGAAGGGGCCTATTGATGTTGGTAGAAGAATAAAAATATTAACTGAATTTGGAATAAGCAAGGATGATATTGATACAATTTGCTCTAGGTATCCTGAATTCTTAGCACTAGGAGTTGATGGTAGATTAAAACCTTTGCTTAACGAATTTAGAGATTTGGGATTTCCACAAAATGAGGTTAAAAAGAATATAGTTGAAGACCCAAATATGGTTTTAAGCATGGAAGTAGGTGAAATCTCTAAATGCATGCAGTTGATAAAAAGTTTAAAATGTAGAGTTTCGATCAAGGAGAAAATTCTTGCATATGGCTATTTCAAAGGTGGAATTCATGTAAAGAATAGAATTGATTTCTTATGCAAGTATGGTTTAATTCGAAGAGATGCGTTCAAGGTTCTATATGTAGAGCCTAGAACCATAATTCATAAGCTGGAGGATATTGAGAAGAAAATTGATTTCTTGGTACAGAAAATGGGATTTACAGTCGAGCATTTAGTGCTATTTCCGGACTATCTGGGTGTGAGTTTGGAAAAACACATTGTACCACGTTTCAATGTTATCGAGCATTTGAAGTCGATTGGGGGGCTTTGTTTTGAGGTGGAACTGAAGCATTTCGTAAGACTTACTAGGATGAAATTTTATAATCTGTATGTGAAACCATACCCTGAATGTGAAGAAATATTTAATGCAACTGTTAGAGAAAAAGAAGTTAGACCTCGTCATCCTCCTGGTTTATGGAAGATGTTTAAACCACCATGCCATCCTGTTGGTGAAGAAGATGTTAAAAATATTAGATTATTTGTGGATTCTCTTGTGTAA

Protein

Gene

>AfisC7G05163
CAGAAACAAACGCACCTCAGCTCAGCCCGATATTCTACAATGGCGATTAGAGCCTTACATGGACGCCATTTTCTCCAAATTACACTTAAATCCTTACTGAAAATCCAATCTCTCTCAACAACCCCAACTCATATAGCAAAAGTTTCATCCCAAACACTAGAAACCAGTGAATCCAGTACCCAAGTGTCAATTGCGAGCACGTTGCAAAGGTATGGCTTCCCCCAATCTCAAACCCACGAATTCATCGAAAAGAATCGTTTTTTATCGGCTACATCATCTGCTAATATTGACAGTTGCATCAACTCTTTGTTACAGTTTGGTATTCCACAAAATGATTTGGCTTTGTTGTTAATTAGTTGCCCTAAAGTTTTAGAACTAGAATTTCTGAACGAATGGAAAATGGCCTTATCAAAACTTGAATCCTGTAGCACATCCGTAATTATAACGATTATTGAACATGCTGCAAAGTTCCATATTGAACCGAATTATTTTTCTAGAAATGTGGAAATAATGAAGGAAAATTTTGGTCTTTCCGATAAAACACTAATTAGTGTTTTTGAAGTATCACCCACTGCATTCATGAAGGGGCCTATTGATGTTGGTAGAAGAATAAAAATATTAACTGAATTTGGAATAAGCAAGGATGATATTGATACAATTTGCTCTAGGTATCCTGAATTCTTAGCACTAGGAGTTGATGGTAGATTAAAACCTTTGCTTAACGAATTTAGAGATTTGGGATTTCCACAAAATGAGGTTAAAAAGAATATAGTTGAAGACCCAAATATGGTTTTAAGCATGGAAGTAGGTGAAATCTCTAAATGCATGCAGTTGATAAAAAGTTTAAAATGTAGAGTTTCGATCAAGGAGAAAATTCTTGCATATGGCTATTTCAAAGGTGGAATTCATGTAAAGAATAGAATTGATTTCTTATGCAAGTATGGTTTAATTCGAAGAGATGCGTTCAAGGTTCTATATGTAGAGCCTAGAACCATAATTCATAAGCTGGAGGATATTGAGAAGAAAATTGATTTCTTGGTACAGAAAATGGGATTTACAGTCGAGCATTTAGTGCTATTTCCGGACTATCTGGGTGTGAGTTTGGAAAAACACATTGTACCACGTTTCAATGTTATCGAGCATTTGAAGTCGATTGGGGGGCTTTGTTTTGAGGTGGAACTGAAGCATTTCGTAAGACTTACTAGGATGAAATTTTATAATCTGTATGTGAAACCATACCCTGAATGTGAAGAAATATTTAATGCAACTGTTAGAGAAAAAGAAGTTAGACCTCGTCATCCTCCTGGTTTATGGAAGATGTTTAAACCACCATGCCATCCTGTTGGTGAAGAAGATGTTAAAAATATTAGATTATTTGTGGATTCTCTTGTGTAAAAATTATGTTAATTTGAGCAATTGCCAAGGGGTGGGAAGGATCAAAAGGTGAAGCTTTTGTCTGTTGTGCTTCATTAGAATTGAAGCTCCCTTGTTTGCAGTGATGTACATTTGTCGTACTTAAACATGTAAAAAGCCAGAGATGTTTTGCATTAAAGAACAACTTTGGGGGATAAATGTGTCGACTTAGACCTGCACCGTGTCTTGAATACTTGAAATAGGTTTTGAAGATGAACTCATGACATAAATGGTTGTTTTTACTGCTTATAAATCAAATTTGAGCCTTGTGGCTATTCTAGCTGCAGTCTTTTATTTCTATTTTTATTTGTAAGGCTTAGTTAATATCGAGGAATAAAAATATATAGTAGAACAATGTAATATGTATCATATTAATTTTTGGTATCTTATGTGATGTTAAAGAGTTTCTTTTTCCTTTATTTCTCTTACTTGTTAAAGTTTTTAAATCCTTTATTTGTACTGCCTTATATAACATACTTTCTCTTTATTATTGACAGAGATATTATGGGGTTTGAAGTAGAAGCAGAAGTTGTGTCGATTAGTTCATCTCCTCTTTGTTTGTATACTGATCAAGGCATTTCGTGTTTGAACCAGGAAATAAGAGAGTAAACGAATTTATTTTGAGGCTATAATATAAGAATGCTCAAGAAAAGAGTTACCTGTGTAAGTTTGTCTTGACTAAAAAAAAAAAAAAAAAATCTTAGGGACTTGTGTATATACTGTTGGGCTTGCTAGTTTCACCAGAAATTGAAGAACCACACATGCCATGTTTATGAATATGAAAATATGTTTTATATTGGAATATATTATCTAAGATGAACTGAGCATGTTCATGATCTGTTCAGTAAAATCCTTGATTAGAAAGTTTCCTGTATAAAGAGTTCAACTTGAGAACTCATTTACGCAAACTTTGAGTTGCCTACTTGGTTGATTTTTACTAGTGTCACTGCTTTCAAAACTTTTTTTACACTAAAATAATTGATTGCCAATCTGTTATGGTTAATCATGATCTGTACATGAATTAATCTTTTTATAAGTTAGATGAATACATATCAAAGTCAGGTTAAGTTAGTGTGTATTTTATCCATTGACAAATCAACTTATGTATTATTATTGAGAATGCTCCCATTAGAATATGATCAAATTTATACAAGTTCAATGTTTAAGAGCACAAATAAAGGT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268706.1	1.3e-139	transcription termination factor MTERF15, mitochondrial
Swissprot	Q9C6A1.1	2.2e-96	Mitochondrial transcription termination factor 15
trEMBL	A0A5P1ES48	9.3e-140	Uncharacterized protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G74120.1	41.53	6e-99	357		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G05163	AT1G74120.1	443	250	5	16	451	5	445	41.53	6e-99	357
AfisC7G05163	AT1G62110.1	335	227	10	51	371	87	409	24.48	3e-10	63.5
AfisC7G05163	AT1G62085.1	434	286	15	2	409	46	457	23.04	2e-09	61.2

Ortholog group

Species	Genes
Allium cepa	g340938.t1
Allium fistulosum	AfisC7G05163
Allium sativum	Asa3G00961.1
Arabidopsis thaliana	AT1G74120.1
Oryza sativa	LOC_Os12g30610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	39	252	61.3	6.9e-17
PF02536.11	mTERF	Family	291	392	58.1	6.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0000394	P	RNA splicing, via endonucleolytic cleavage and ligation
GO:0003723	F	RNA binding
GO:0005739	C	mitochondrion

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network