result

Gene information

Detail information of AfisC7G05192

Location

Gene	Chr	Start	End	Strand
AfisC7G05192	chr7	947479972	947482682	-

Sequences

CDS

>AfisC7G05192
ATGATGTGGAAATGGTGGCAGAAAGTGTGCATCTTTATGTCCCTTGGTATTTTCACAGCATCATGCAGCAGTGAGTGCCAGTCAGAAAGTAAGTTTTTAATCCAATTTATAAAATCCATAGATCCCAAAAATAAGTTAAATAACAAATTTGAACATGTACCTGACTGCTTCTCTAATCCATGGCCTGGTATAAAATGTGATGCGTTGTCTCTCTGCATAACGGATATCAGGCTTGAAAATAAGAATTTGAGTGGAAATATAGATGCAGTTTCTCTTTGCAAGATCAAAAATTTACAGGTTCTGAACTTAGCAAGTAATAATATTCATGGGGTCATTCCTGAGGCTATTTCAAGCTGCATCAACTTAACATATTTGAATCTGAGCAGTACTATGCTTCATGGAAACGTGCCAGCATCTTTATCCCGCTTAAAGAAACTCCAAATATTAGACATCTCACTCACTAATCTAAAAGTGAGTGTGTTAGGTTCATTATCCTCGAGCAAGAATGATACTGCAAATGTAACCGGTAATGATAATGGGCGAACAAATTCTGGTAAAAAAACACCAGATATCAAGTGGACAGTGGCACTTATCACTTTTCTTCCTTTGCTTCTCTTACTGTTCTTCTACTACATCTTCGCATATTTGACATACAAAAACGTTCCTAAATTATGTACCGAGAAGGAGTTTGCAAAGCAGAGTTCAGAATCTCCAGTAAAGATACTTGTAGTCAGTACAGAGGAATCTAGCGAAAATATAGAAGAAACCGATCTAGCATTTTTCAAGGAAAACTGCTCAAAATTTTGTATCGAAGAATTGCTCAAATCTGCAGCAGATTTACAAGGTCAGAACTTCTATAGTACCTTGTACAAGGTGAAAATGCATAATACATCATTATATGCTGTAAAAAGACTGAAGAATTTTCAAATAATGAAAGACGAGTTTAAAGCTGAATTTACCCGGATAGGAAAGTTGAGACACCCTAATCTTTTGCCTCTCTGTGCTGTCAATTCATCGGAGAAGGAAAAATTCCTAATATACGGGTTTCAAACAAATGGAAGCCTTGCAGCACTAGTATCAAGCTATGTGAAGAAACGAATAGAGTTCCCCTGGAGAGAAAGGTTGTCTATCATGAGCGGCATAGCAAGAGGTCTCGCATTCATAGCAAAGGAATCAAGCGAGAAAAATCCAGCTCATGGGAATCTAAAGCCATCAAATATCATACTAGGTGACACAAATGAACCGCTTATAAGTGAATATGGAATATGGGGATTTCTCGATCAGCCACAAGCATTTCTTTACTCTTCTATTGGTTATAGAGCTCCTGAGAAAAGAATAACAAAAGAGGCCGATGTCTACAGCTTCGGTGTCATACTTCTTGAGCTGCTAACTGGAAAAATTGGAAATTTAAATCTTCCGAAGTGGGTGAAATCAATGGTGAGAGAAGAATGGACAGGGGAAGTTCTTGACAAAGTAGTGAGAATAGAAGGTAACAAATATGCCTTCTCAATGCTTAATATTGCACTTAAATGTGTGTCGGATTTACCCGAGAGACGTCCAAGCATATCGGTTGTTCTTGAAAAGATTGAACATGTGATACATTCACAAGAGTCCAACTCTTTTTCATCTACATCTTCTAATGGATCAGACTAA

Protein

Gene

>AfisC7G05192
AAATAAACGGGGATAATTAGGGAAACAAAATATTATAAAAAAAAATAAGGACCGGATTTACAAGTTTAAAACGAAAGGAGTTTTGGGCTATTAAATTTGATTTTAGAGACGTGGGCCTAATTTTCACTATTTTAAATCTACTAACAATAATTTCATATAAGAAATTTAAGAAATAATCGCCCGGTCCTATTTTTCGATGTTCCATGGACCAATTGAATTTCCACCACACAATTATTATATTTTAACCAATTAAAATAAATGAAAAGGTCAAATGTTTAGTGGAGATTGAATTGATCCATGGAAACACCTTAAATAGACCTAGGTGATTTCAGCCCAAGAAATTTGGTCATGAATAATAACATAATCAATTTGTAAATAATCAGTTTCTTGTAATCCACTACCTCCATGAAAGTACAAGCATTATTGTTACTTTATTGTTCCTATGGTACACCTAGCTATATTTTTTCTCGATCGTAGATAAAAAAACATATTTATATCTAAGAATGATAAACCAAGTCATCAAGTATTGCCTTCTCCTTAGTGACGCAACCTGTAATAGTGCTTTGGTAACTTTAAGATGGTTGATATTGTTATTTTCATTAATCTGGATATATGGGAGAGATTTAAAAATAGGTGTTTAGGAATGTTGAGTGTTGTAAGCATTGATATCACCGGTTAGAAAGTTTTGCACATTGGAATATACGGTAACACTGTCAGTATCCAACAAACCAATGAGAAGGGCAAATGGAAGCTGTAGAAGTGTATAAATTCTCACTATGTCAATCTAATTTAAATAAAATTTTCTTAGTCTATGATGTGGAAATGGTGGCAGAAAGTGTGCATCTTTATGTCCCTTGGTATTTTCACAGCATCATGCAGCAGTGAGTGCCAGTCAGAAAGTAAGTTTTTAATCCAATTTATAAAATCCATAGATCCCAAAAATAAGTTAAATAACAAATTTGAACATGTACCTGACTGCTTCTCTAATCCATGGCCTGGTATAAAATGTGATGCGTTGTCTCTCTGCATAACGGATATCAGGCTTGAAAATAAGAATTTGAGTGGAAATATAGATGCAGTTTCTCTTTGCAAGATCAAAAATTTACAGGTTCTGAACTTAGCAAGTAATAATATTCATGGGGTCATTCCTGAGGCTATTTCAAGCTGCATCAACTTAACATATTTGAATCTGAGCAGTACTATGCTTCATGGAAACGTGCCAGCATCTTTATCCCGCTTAAAGAAACTCCAAATATTAGACATCTCACTCACTAATCTAAAAGTGAGTGTGTTAGGTTCATTATCCTCGAGCAAGAATGATACTGCAAATGTAACCGGTAATGATAATGGGCGAACAAATTCTGGTAAAAAAACACCAGATATCAAGTGGACAGTGGCACTTATCACTTTTCTTCCTTTGCTTCTCTTACTGTTCTTCTACTACATCTTCGCATATTTGACATACAAAAACGTTCCTAAATTATGTACCGAGAAGGAGTTTGCAAAGCAGAGTTCAGAATCTCCAGTAAAGATACTTGTAGTCAGTACAGAGGAATCTAGCGAAAATATAGAAGAAACCGATCTAGCATTTTTCAAGGAAAACTGCTCAAAATTTTGTATCGAAGAATTGCTCAAATCTGCAGCAGATTTACAAGGTCAGAACTTCTATAGTACCTTGTACAAGGTGAAAATGCATAATACATCATTATATGCTGTAAAAAGACTGAAGAATTTTCAAATAATGAAAGACGAGTTTAAAGCTGAATTTACCCGGATAGGAAAGTTGAGACACCCTAATCTTTTGCCTCTCTGTGCTGTCAATTCATCGGAGAAGGAAAAATTCCTAATATACGGGTTTCAAACAAATGGAAGCCTTGCAGCACTAGTATCAAGTAAGAAATCCCCCCCCCCCCCTACAAAACTGAAGTTCATGTTGCAGTAGCTCATTGTTGTTGTTATTTCTATCAGGCTATGTGAAGAAACGAATAGAGTTCCCCTGGAGAGAAAGGTTGTCTATCATGAGCGGCATAGCAAGAGGTCTCGCATTCATAGCAAAGGAATCAAGCGAGAAAAATCCAGCTCATGGGAATCTAAAGCCATCAAATATCATACTAGGTGACACAAATGAACCGCTTATAAGTGAATATGGAATATGGGGATTTCTCGATCAGCCACAAGCATTTCTTTACTCTTCTATTGGTTATAGAGCTCCTGAGAAAAGAATAACAAAAGAGGCCGATGTCTACAGCTTCGGTGTCATACTTCTTGAGCTGCTAACTGGAAAAATTGGAAATTTAAATCTTCCGAAGTGGGTGAAATCAATGGTGAGAGAAGAATGGACAGGGGAAGTTCTTGACAAAGTAGTGAGAATAGAAGGTAACAAATATGCCTTCTCAATGCTTAATATTGCACTTAAATGTGTGTCGGATTTACCCGAGAGACGTCCAAGCATATCGGTTGTTCTTGAAAAGATTGAACATGTGATACATTCACAAGAGTCCAACTCTTTTTCATCTACATCTTCTAATGGATCAGACTAACAACATCATAAGAGTTTATTTTATAGAAATAAAGATAAGCCAAGGCAATTAATGTTTGCCATCATTATTGATTGATCTAATGGATAAAATTGTATCCTTTGATTAATTTTGTATAATAGTTCATTGACAGTTTATTAGAAAAAAATTGTAATGAAGTAAAACTTGCTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008779076.1	3.3e-113	putative inactive receptor-like protein kinase At1g64210
Swissprot	O48788.1	4.9e-45	Probable inactive receptor kinase At2g26730
trEMBL	A0A8B7BK70	2.4e-113	putative inactive receptor-like protein kinase At1g64210

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G08680.1	28.78	2e-55	213		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G05192	AT3G08680.2	615	336	16	11	532	9	614	28.78	2e-55	213
AfisC7G05192	AT3G08680.1	615	336	16	11	532	9	614	28.78	2e-55	213
AfisC7G05192	AT1G64210.1	484	290	15	73	532	114	581	31.82	5e-51	199

Ortholog group

Species	Genes
Allium cepa	g137462.t1
Allium fistulosum	AfisC7G05192
Allium sativum	Asa3G00945.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13855.3	LRR_8	Repeat	97	155	35.2	6.6e-09
PF00069.22	Pkinase	Domain	286	527	72.5	3.1e-20

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005774	C	vacuolar membrane
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009610	P	response to symbiotic fungus
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0022626	C	cytosolic ribosome
GO:0044237	P	cellular metabolic process
GO:0080092	P	regulation of pollen tube growth
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:2000605	P	positive regulation of secondary growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network