Detail information of AfisC7G05584
| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| AfisC7G05584 | chr7 | 1009488461 | 1009523247 | + |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | XP_020094088.1 | 0.0e+00 | probable helicase CHR10 isoform X2 |
| Swissprot | F4IV45.1 | 7.7e-313 | Protein CHROMATIN REMODELING 10 |
| trEMBL | A0A6P5FKY7 | 0.0e+00 | probable helicase CHR10 isoform X2 |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT2G44980.2 | 63.75 | 0.0 | 1133 | ASG3;CHR10 | SNF2 domain-containing protein / helicase domain-containing protein |
| Species | Genes |
|---|---|
| Allium cepa | g60621.t1 |
| Allium fistulosum | AfisC7G05584 |
| Allium sativum | Asa3G00693.1 |
| Arabidopsis thaliana | AT2G44980.1; AT2G44980.2 |
| Oryza sativa | LOC_Os03g01200.1 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF00176.20 | SNF2_N | Family | 61 | 350 | 168.6 | 1.3e-49 |
| PF00271.28 | Helicase_C | Family | 374 | 495 | 53.4 | 2.5e-14 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0000183 | P | chromatin silencing at rDNA |
| GO:0000793 | C | condensed chromosome |
| GO:0036310 | F | annealing helicase activity |
| GO:0000790 | C | nuclear chromatin |
| GO:0003678 | F | DNA helicase activity |
| GO:0003682 | F | chromatin binding |
| GO:0003697 | F | single-stranded DNA binding |
| GO:0006369 | P | termination of RNA polymerase II transcription |
| GO:0006334 | P | nucleosome assembly |
| GO:0042393 | F | histone binding |
| GO:0005524 | F | ATP binding |
| GO:0005737 | C | cytoplasm |
| GO:0005667 | C | transcription factor complex |
| GO:0005677 | C | chromatin silencing complex |
| GO:0005700 | C | polytene chromosome |
| GO:0005730 | C | nucleolus |
| GO:0006302 | P | double-strand break repair |
| GO:0006348 | P | chromatin silencing at telomere |
| GO:0006352 | P | DNA-templated transcription, initiation |
| GO:0019237 | F | centromeric DNA binding |
| GO:0009790 | P | embryo development |
| GO:0007420 | P | brain development |
| GO:0007517 | P | muscle organ development |
| GO:0008134 | F | transcription factor binding |
| GO:0008623 | C | CHRAC |
| GO:0009506 | C | plasmodesma |
| GO:0010228 | P | vegetative to reproductive phase transition of meristem |
| GO:0015616 | F | DNA translocase activity |
| GO:0016569 | P | covalent chromatin modification |
| GO:0016584 | P | nucleosome positioning |
| GO:0016589 | C | NURF complex |
| GO:0016590 | C | ACF complex |
| GO:0019233 | P | sensory perception of pain |
| GO:0031213 | C | RSF complex |
| GO:0032392 | P | DNA geometric change |
| GO:0033683 | P | nucleotide-excision repair, DNA incision |
| GO:0035041 | P | sperm chromatin decondensation |
| GO:0035060 | C | brahma complex |
| GO:0035063 | P | nuclear speck organization |
| GO:0035076 | P | ecdysone receptor-mediated signaling pathway |
| GO:0035092 | P | sperm chromatin condensation |
| GO:0042752 | P | regulation of circadian rhythm |
| GO:0042766 | P | nucleosome mobilization |
| GO:0043044 | P | ATP-dependent chromatin remodeling |
| GO:0043596 | C | nuclear replication fork |
| GO:0045944 | P | positive regulation of transcription from RNA polymerase II promoter |
| GO:0046020 | P | negative regulation of transcription from RNA polymerase II promoter by pheromones |
| GO:0048813 | P | dendrite morphogenesis |
| GO:0060195 | P | negative regulation of antisense RNA transcription |
| GO:0070615 | F | nucleosome-dependent ATPase activity |
| GO:0090537 | C | CERF complex |
| GO:1900036 | P | positive regulation of cellular response to heat |
| GO:2000177 | P | regulation of neural precursor cell proliferation |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K20092 | CHD1L; chromodomain-helicase-DNA-binding protein 1-like | EC:3.6.4.12 | - | - |