result

Gene information

Detail information of AfisC7G05608

Location

Gene	Chr	Start	End	Strand
AfisC7G05608	chr7	1011281691	1011283355	-

Sequences

CDS

>AfisC7G05608
ATGCTATCATCAAACTTCTCCTTCTCCCTTTCCTTCATCCGCCGCTTCTCCGCCAGACCAAAACCAACTCCATCATCCCCATTGCCGAAACTCAAAAACATCGCTGACCGCCACCACCGCGTCCCAGCCATAGCCGCAGCCAAGCTTGCCCTGATCGACTATCTTCAATCCACCCGCTGTCTCCCTTCCTCCCTCTCCCACCAAATCATCTCCAATTCCCCTTTCTCCCTCTCCTCCTTCCTCTCCCTCGTCCCCTTCCCTTCCTCCTCCGTTCCCTCCGACTTCCCCTCCCTCATCGACCGCTTCCTCTCCTACCACCCCATCGACGAGTTCCTCTTCTTCTACGAGTCCATCGGCCTCTCTCCTCCCTCCTTCCCCCGAAAAATCAACTCTCTTTTCCTCTCCGACGACCCTTACCTCCTCAGATCCGTCCACGTCTTCCTCTTTTACGGCTTCCCTTTCCGGAAACTTGGGCTCGTCCATGCCTACTTCAATGAAGATGCGGACGAGTTGAGTAGCAGATTGAAATGGTTCGAGGAGTTAGGGTTCAGACGCCCTTGTGTTGCTGGCGCGTGTCTTGCGTTTCCTTGGGTTCTGAAGAGCGATGTGGAAAAGGAGGCAGCATTGTTGTTTAACGATTTAGGTCCCTTTCTCTTATATTGCAAATCCAATGATGCAGAGGCAGTATTTGAGATATGTGAAAAGTTGAAGGTGTTCTATAGGAATGCATCAGGGAAGAGGGGATGTCTTTTTGTCGAGGCCAGAGAGGAGGTCATGAGACAAAAATTGGGGATGAAGGAGGAGGAGAGTCGGATGGTCATGTTCAGTAATATCAGTGTTTCAGATATCGAATTAGGGAATTTGGAGATTGACCTACCGGATGTTTTGATGAAGCTTTTAGGTTTAGACGAAGAAGAAATCAAAAGGCTTCATAAAATGTACCCTCATGTGATGGGGAGTAATGTTGTAGGGAATTTTATGGCAATATTGAAAGCCCTTGATTTGGATACACGATATAATGATAAAATTATGAATATGGACCTTCATTGTTTGAAGGTTTTGAGCAGTGAAACTACCATTAAATCTTGTGATAACGACGTGGACAATAAAACCAAAAAATTGGACGATACGCTTGATTTTTTGTTGAGTGTTGGTTTTGGAAGAAACGATATTACATTGAAGGTTGCATCTTCGATACATGGGGCAAGAGATAAATTGCAAGAGAAATTTGATTGCCTTGTTGGATTTGGAATTGGACATGGTGATGTTTGTAGAATGATAAGTACTTCTCCTCGCATTTTGAATCAGAGTGTGGACCTGATTCAAGGGAAAGTGAATTACCTTTGCGACGAATTGGGTTTTCCGGTGGATTATTTACAGAAATTTCCAGCTTATTTATGTTATGATTTGGAGAAAAGGGTAAAGCCTAGGAATAATATTATGAATTGGCTTAAAGAAAATGGATTAGTGAAGAAAGAAGGTTCGTTTTCTGTTCTTATTTCTGATGCTGAAAAGAGGTTTATTAAATATCTCTATCGAATTCATCGAGCAGCTCCTAAACAATGGTTAGAGACTTTTCAGCAGTGA

Protein

Gene

>AfisC7G05608
CATTTCCTTGACGAGACTAAGCATTTGTGAGGAGTGGCTGGTTTGTAGCCTAAAACCCTTCGAAGCAAAACATTAATTATGCTATCATCAAACTTCTCCTTCTCCCTTTCCTTCATCCGCCGCTTCTCCGCCAGACCAAAACCAACTCCATCATCCCCATTGCCGAAACTCAAAAACATCGCTGACCGCCACCACCGCGTCCCAGCCATAGCCGCAGCCAAGCTTGCCCTGATCGACTATCTTCAATCCACCCGCTGTCTCCCTTCCTCCCTCTCCCACCAAATCATCTCCAATTCCCCTTTCTCCCTCTCCTCCTTCCTCTCCCTCGTCCCCTTCCCTTCCTCCTCCGTTCCCTCCGACTTCCCCTCCCTCATCGACCGCTTCCTCTCCTACCACCCCATCGACGAGTTCCTCTTCTTCTACGAGTCCATCGGCCTCTCTCCTCCCTCCTTCCCCCGAAAAATCAACTCTCTTTTCCTCTCCGACGACCCTTACCTCCTCAGATCCGTCCACGTCTTCCTCTTTTACGGCTTCCCTTTCCGGAAACTTGGGCTCGTCCATGCCTACTTCAATGAAGATGCGGACGAGTTGAGTAGCAGATTGAAATGGTTCGAGGAGTTAGGGTTCAGACGCCCTTGTGTTGCTGGCGCGTGTCTTGCGTTTCCTTGGGTTCTGAAGAGCGATGTGGAAAAGGAGGCAGCATTGTTGTTTAACGATTTAGGTCCCTTTCTCTTATATTGCAAATCCAATGATGCAGAGGCAGTATTTGAGATATGTGAAAAGTTGAAGGTGTTCTATAGGAATGCATCAGGGAAGAGGGGATGTCTTTTTGTCGAGGCCAGAGAGGAGGTCATGAGACAAAAATTGGGGATGAAGGAGGAGGAGAGTCGGATGGTCATGTTCAGTAATATCAGTGTTTCAGATATCGAATTAGGGAATTTGGAGATTGACCTACCGGATGTTTTGATGAAGCTTTTAGGTTTAGACGAAGAAGAAATCAAAAGGCTTCATAAAATGTACCCTCATGTGATGGGGAGTAATGTTGTAGGGAATTTTATGGCAATATTGAAAGCCCTTGATTTGGATACACGATATAATGATAAAATTATGAATATGGACCTTCATTGTTTGAAGGTTTTGAGCAGTGAAACTACCATTAAATCTTGTGATAACGACGTGGACAATAAAACCAAAAAATTGGACGATACGCTTGATTTTTTGTTGAGTGTTGGTTTTGGAAGAAACGATATTACATTGAAGGTTGCATCTTCGATACATGGGGCAAGAGATAAATTGCAAGAGAAATTTGATTGCCTTGTTGGATTTGGAATTGGACATGGTGATGTTTGTAGAATGATAAGTACTTCTCCTCGCATTTTGAATCAGAGTGTGGACCTGATTCAAGGGAAAGTGAATTACCTTTGCGACGAATTGGGTTTTCCGGTGGATTATTTACAGAAATTTCCAGCTTATTTATGTTATGATTTGGAGAAAAGGGTAAAGCCTAGGAATAATATTATGAATTGGCTTAAAGAAAATGGATTAGTGAAGAAAGAAGGTTCGTTTTCTGTTCTTATTTCTGATGCTGAAAAGAGGTTTATTAAATATCTCTATCGAATTCATCGAGCAGCTCCTAAACAATGGTTAGAGACTTTTCAGCAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020698339.1	1.8e-92	transcription termination factor MTEF18, mitochondrial
Swissprot	Q9M219.1	6.9e-65	Protein SUPPRESSOR OF HOT1-4 1
trEMBL	A0A8T3BRJ8	2.4e-94	Transcription termination factor MTEF18, mitochondrial

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60400.1	32.73	2e-72	270	SHOT1	Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G05608	AT3G60400.1	550	296	15	33	526	17	548	32.73	2e-72	270
AfisC7G05608	AT4G19650.1	507	294	15	61	522	85	567	28.40	6e-40	162
AfisC7G05608	AT5G06810.1	540	353	15	14	516	44	569	25.19	7e-34	142

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	300	507	69.6	2e-19

Gene Ontology

Accession	Ontology	Name
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006996	P	organelle organization
GO:0044444	C	cytoplasmic part

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network