Detail information of AfisC8G00047


Location
GeneChrStartEndStrand
AfisC8G00047chr81358444513608147-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010940726.10.0e+00DDT domain-containing protein PTM isoform X1
SwissprotF4JYC8.15.2e-247PHD type transcription factor with transmembrane domains
trEMBLA0A6I9SJJ00.0e+00DDT domain-containing protein PTM isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G35210.237.820.0 866PTMmetalloendopeptidases;zinc ion binding;DNA binding

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag128645.t1
Allium fistulosumAfisC8G00047
Allium sativumAsa1G04656.1
Arabidopsis thalianaAT5G22760.1; AT5G35210.1; AT5G35210.2
Oryza sativaLOC_Os11g05130.1; LOC_Os11g05130.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02791.14DDTFamily27432843.92e-11
PF15612.3WHIM1Family38041731.58.5e-08

Gene Ontology
AccessionOntologyName
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0002458Pperipheral T cell tolerance induction
GO:0003682Fchromatin binding
GO:0042393Fhistone binding
GO:0005737Ccytoplasm
GO:0006959Phumoral immune response
GO:0008270Fzinc ion binding
GO:0042802Fidentical protein binding
GO:0016604Cnuclear body
GO:0032602Pchemokine production
GO:0045060Pnegative thymic T cell selection
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0097536Pthymus epithelium morphogenesis
GO:2000410Pregulation of thymocyte migration

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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