result

Gene information

Detail information of AfisC8G00166

Location

Gene	Chr	Start	End	Strand
AfisC8G00166	chr8	38064213	38067752	+

Sequences

CDS

Protein

Gene

>AfisC8G00166
CAACATCCTAATTCTCTCTAAGCTAAATAACTCTCAATATTTCTTGTTCTTAATTCAGTTATAGGATCGATATGAGTTACTTGAGCTCGGTTGAGGCAAAATTGCCACCAGGGTTTCGGTTTTACCCGAGGGATGATGAGTTGATATGCGACTATCTTGCACAGTATAAGTTGATTTCAGGTGATGGCCATGGAAATAATGGATTGAAGAATATGTTTGGTTTCTTTCCTATCATGGTTGATGTCGATCTTAACAAGTGTGAGCCATGGGATCTTCCTGGTAAGTATATATCTTCTTGTATATGTAAAATTTTCTCATCCGAAATTCTGTTTTATTGGGTAGTGAGATGAGTTGATTTTACTTATTATGATATTCAAACTTTTGTTCTGAATTTATGTCATCTGTGGATTTTATTGGTGGAGGAAAATACTCAACTTATTAACCTATATCTAGTTCATATAGGGTATACTGTATCTTGGGATTAAATTTTCAACTAATTTTGGTATTATAACGATAGCTTTAGAATAGTGATAGCTCGTTTTTGATTCCTCTACTAATATTATAACATTTGATTTTGATGGTGCACACAATTCATTTTGTGAAGTTTTGGCAACAATACAGTGAGAAATACTTTGAGTGGTATCTTTAGAAATGCATTGAAATACAAAAATATCAGATCTATGTATGATTATTCAGTCAAGATTTTTAAGATCATTTTATGTTGTGGATAGCATATCATTTGCTTTCAGTATTGTTTGTCCTTGTGATGGTTGAGAAAGTGGGTTCCACCACTTCTACACATTTAATTTCCACTACGAGCATGAAATCTCATAACAGAAAGAAAACCATGTGTTGAAAAACCGAATGAATTGTGATTCTTCGAACTCCTAAATCAGTCTAAGGTTTTACTTTCCAGAGTCTAGCATTTTTTTTATACATGTGTTTGTGCCATGGATCTATGAAAGTAAACCGTGTAATTGGTTCATTTCTGAAATTAACTTCGTATTTTTTAAGCAAGGTGTTTCTGAAAATATATTAGGGACGGAAAAATGCACATTCATATCTCGTCACTATTTCCTTATAATAGAAATAGGTTCTTTCTTATCCATTTTTTTCAATGCTTCACATTCATTATTTCCTGGCCTGTCTCTTTTCCTCATTTTGCCTTTGATTACCTCACGTATGCCACACTTATTCAGGTCATTTTTATTCTATTTATAAGAATTTAGTTCATTTTCGTATTCATTCTGGATATTGTTTGAAAATGACTTATTGCAAGCATATGAAACCAACTATTGGTTGTAACCAAATGATATTAAAAGTATATCCGTATGTTGCTTGACTTATTCAAGGTTTGAATTCTTACACCAATCATTTATTTCTTTTGATCTCCATCTTGGTTTGGTTCTTGCTAACGAAGGCAAATAACATACAACTACAGAAAAATGAAAACCATGCCCTAATAAGTTTATACGGACTGAAGGTGAGCTATAGCACTAAGAGGCCATTGTGACATATAGAATAGTAAACTAATCGACAAACAGTTGAGTTACTGAGGTAGGGACTCAATTAATTGTGCGTTAGTTAGATTAAGATGTTAACATTGATATTTTCGTCTCACTAACTCCATTGTTTTGTATCTAGAACCTTTTTTTTGTGGGTCATAATGTGAACATCCACAACTTTGCAACTTCTCGATGTTAATTATTATGTTATAATATCCGATTCTTAACCAATCTAGTTACTTTAATCTGGAATTAGGATACGTGTAACTACACTTGCAATTAATTTATCGTGTGTATTGCAATGGATGATATGATGTACTTCCCTAGGCCCAATGATTGAAGTGTTTATCCCTAGCTTTATTGTGGGACCGCTTTTGACACTTTGAAGCAAAATTTCATTTTCCTAGTTTCATTCAGTTCTTTTTTGTTACACAATACCCGAGCTTGAATTGTCAATAATGCACTCAAGTATCACATATAGATTTCATAATCATACCACGACATTAATTTCCGTGAAACAGATACAGCATGCATAGGAAATAAAGAGTGGTACTTTTTCAATCTCCGGGATCGAAAATATGCAACGGGGCAGCGCACAAACCGTGCAACGGTTTCAGGATACTGGAAAGCAACTGGAAAAGATAGGCAAGTAGTTAGAAAAGGGACACTTGTGGGCATGAGAAAAACTCTAGTATTTTACCAAGGAAGAGCTCCAAAAGGGAAAAAGACCGAATGGGTCATGCACGAGTTTCGATCCGAGAGCCCTGGCGATCAACAATCAAGGCTAATCTCTTCCAAGGTAATCCATCATCCTATCAGTTTTATATAATCATATATGTACTATAAATATGCATATTTCTGTACATTGTATGAAGGATCCACCTAAAATTGGACTGTTCAAAACACTATAGTATATTAACTAAATGTATTTTTGTTTGGATAGCTCAAGTCAAAACCTAAACCCCTTGAATAACATGTGAGCTTCTCATAATGATAATTTACCCTTTTTTTTTCTTTTTGGAAATAAGAATCCATCCCTTATTTTGAAACTTAACACACCAAAAAACCTTCTCAAAAATAGGTTCTAAATTACCCCCTTAATTTATTTTCGACAATTTTTTCTTTTTCGTTTTTTTTTCGAAAATCAAATCTGCGGTTAATATGATCAAAACTAAACTTTTTTTCCCCTTTTGCACACGTGCAAATTCTTGTAGTTTGGTTGAAATTAAAAATGGGTTTGCTTTTCAAAACCTGTTTTTGAAAAGGGTTGTATATTTTGAAACTTAAAAGACAGCGTTTTAACGAAATTCTTTTTTTATTTTTTATTTATACATGTAAACAGGAGGATTGGGTGCTATGCAGAGTTTTCTACAAAAGTCGAGGAATCTCAACACCATCAAAGGGAGCTAATGCAGAAAGCTGCGTCGATGACACAGGCTCTTCCTCACTTCCAGTACTTCCAGGCACCTATCATAACAATAGTAGTAGCAACATCACATTTAACCAAAGCTTCAGTTATCCGGTAATGAACTCCTTATGCAACAAAAACAGTATCGGTACAAATGCAACTACAGTCAGTTCATTTGAGCAAGTGCCCTGCTTCTCCAGTTTTTCGCCATCCAATGACTTGGCCTCTACTTGCCTGAAATATGTTCAGGAGCAACTAAGCAAGTTAGATAGCAAGGTAGATGACGCTAGCTCCGAGAGCTACGCTCTCTCCTCCTCCATTTGGTATCCTTTTCAAAACTAGGATTGCATGTGCTTATTTGGATCCAGTTATTCTTGTATATAATTTTATTACATTTATATATATGTGTGTGTGTTAAAATAAATGTATGGTATTGTAATGTTTTGTTATGCTATTTTTATATTGGTGTGTTTCTTTCAACATGTGAAATGTTGAAAATGTAATAGTGTATGAGGGCATATGTGACATGATGGTGATCATTATAATATTGGCAATTTCATTGTTTTCATTATGTTTTGGCATGAAAGTTGTTAGGTGGTAATATATATTCACTGAATAATTCTTTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020270255.1	7.0e-86	NAC domain-containing protein 21/22-like isoform X1
Swissprot	Q84TE6.2	1.1e-67	NAC domain-containing protein 21/22
trEMBL	D6MKM8	1.0e-94	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G56010.2	47.30	3e-69	258	anac021;ANAC022;NAC1	NAC domain containing protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00166	AT1G56010.2	315	124	11	2	290	10	308	47.30	3e-69	258
AfisC8G00166	AT3G12977.1	291	110	12	4	284	11	265	46.39	5e-60	228
AfisC8G00166	AT3G18400.1	168	55	3	7	174	1	153	58.33	6e-53	204

Ortholog group

Species	Genes
Allium cepa	g219071.t1
Allium fistulosum	AfisC8G00166
Allium sativum	Asa1G04582.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	12	147	83.7	1.1e-23

Gene Ontology

Accession	Ontology	Name
GO:0000975	F	regulatory region DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010072	P	primary shoot apical meristem specification
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010223	P	secondary shoot formation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0048467	P	gynoecium development
GO:0048527	P	lateral root development
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051782	P	negative regulation of cell division
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1903648	P	positive regulation of chlorophyll catabolic process
GO:1904250	P	positive regulation of age-related resistance
GO:0090709

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network