Gene information

Detail information of AfisC8G00271

Location

Gene	Chr	Start	End	Strand
AfisC8G00271	chr8	53705862	53706083	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026665352.1	2.1e-07	transcription factor E2FB-like isoform X2
Swissprot	Q9FV71.1	6.3e-09	E2F transcription factor-1
trEMBL	A0A6I9RAM3	1.5e-07	transcription factor E2FB isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G22220.2	68.89	4e-11	62.8	ATE2FB;E2F1;E2FB	E2F transcription factor 1

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00271	AT5G22220.2	45	12	1	12	56	151	193	68.89	4e-11	62.8
AfisC8G00271	AT5G22220.3	45	12	1	12	56	151	193	68.89	5e-11	62.8
AfisC8G00271	AT1G47870.2	45	12	1	12	56	176	218	68.89	3e-10	60.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02319.17	E2F_TDP	Domain	18	55	49.4	3e-13

Gene Ontology

Accession	Ontology	Name
GO:0000083	P	regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0002064	P	epithelial cell development
GO:0005654	C	nucleoplasm
GO:0005667	C	transcription factor complex
GO:0005730	C	nucleolus
GO:0006367	P	transcription initiation from RNA polymerase II promoter
GO:0006884	P	cell volume homeostasis
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0009887	P	organ morphogenesis
GO:0008015	P	blood circulation
GO:0008134	F	transcription factor binding
GO:0008284	P	positive regulation of cell proliferation
GO:0009733	P	response to auxin
GO:0010090	P	trichome morphogenesis
GO:0016528	C	sarcoplasm
GO:0019760	P	glucosinolate metabolic process
GO:0019904	F	protein domain specific binding
GO:0042023	P	DNA endoreduplication
GO:0044458	P	motile cilium assembly
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046982	F	protein heterodimerization activity
GO:0051446	P	positive regulation of meiotic cell cycle
GO:0051782	P	negative regulation of cell division
GO:0070345	P	negative regulation of fat cell proliferation
GO:0098534	P	centriole assembly
GO:1903251	P	multi-ciliated epithelial cell differentiation
GO:1990841	F	promoter-specific chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network