result

Gene information

Detail information of AfisC8G00698

Location

Gene	Chr	Start	End	Strand
AfisC8G00698	chr8	132742351	132744496	+

Sequences

CDS

>AfisC8G00698
ATGTTCAATATCTTCCAACCAAACCACTGGATTTCCGCAACTAACAAAAAGTTCGACGCTTTCGACAACAATAGTATAATCGCCCGAAGCCCGAGCTCTAACTCCACCCTGTCTTCTCACTGCACTTCCGACACTTCCGGCGTGGCGGCCGCCGCCACTTCCACCGCCGCTGCCGCTTCCGCCAAACATGATGAGCTGGCTTCATCCACCGAGTTTCAACCTGCTACTTTTCCTTCCATCAACGATGACTGGGAGAATTTACTCTCAGCCCCTAACGAAGAACAAACTTTCCTCGGCTGGATCATGTCGAACGAGCAACAAAATGTCATAAACCCCTCGGATTTCGAAGGGTTTTCTAACTTACTCGAGCCCAGTTTCCAAGAATTCGAAATTGACAACCCCGTCTCTTTCCTAGGCGACAATGAAAAATCCACGTTTAATCCCGTACCGGTTCAAAACCCGTTACTGTACAACCCGACCCGACAACCCGATACCCACTACCTCGTTCCTCCGAACCCGAAACGCCTCCACTCAGCCGCATTTCCACAGAGCAACATCGTGCAGCAGCAGCGTCCTCCTCCAAAGCCGAAAGAAGAAACCGTAACAACAATAGCGCAGCAGCAACAGGTCATCGTTGACCAGCTATTCAAGGCTGCGGAGCTTCTAGAAGCTGGCAACCCTTTCACTGCGCGTGAGATATTGGCGCGGCTCAATCAGCAGTTACCCCCTTCTTCCCTCGGGTTGAAACCCATCCTAAGATCCGCTTTCATCTTCAAAGACGTCCTCACCTCCATCGCCACCGGTTCACGTCTGAACCCGAATCCGTTATCAAATCCATGGGACGTCGTCTTCAAGCTCAGCTCATACAAGGCCTTCTCAGAGGTGTCACCATTGATCCATTTTACCGATTTCACCTGCACCCAGACTTTGCTAGAAGAAATCGGGTCCGATGACTGCATCCACATCGTTGATTTCGACATCAAAATCGGAGGTCAGTGGTCTTCCTTCATGCAAGAGTTAGCCCATCGGAGATCCAACAACGGCACAATTCCATTCCTCAAACTCACAGCAGTCGTCTCGGTTCCGGGTTTCCACCCGTTAGAGCTCCAGCTAACCCGAGAAAACCTTTCTCAATTCGCTCAAGAACTCAGCATCCCCTTCGAATTCAACTTCATAACCATCGAATCGTTCGACCCGAACGAGTTCCTAACCACTAACGAATCCATAGCAGTTAATTTACCTATTGGGTCTCACTATGTTCATACTCTACCCACGATCATCCGTTTGGTCAAACAGATGAACCCGAAAATAGTTTTGTCAGTTGACCAAGGGTGCGATAGAAGCGACCTGCCATTTTCGCACTACTTCCTACACACGTTTCAGTCATGCATGGTTCTTCTAGACTCTATAGATGCAGCAGGGACAAACGCTGATGTGGCGAGCAAGATAGAGAAGTTCTTGGTTCATCCGAGGGTTGAGAGTTGGATCGTGGGCAGGCATCGTGTGGTTGAGAAAGTGCCACCTTGGCGAGCCATGTATGCATCGGCCGGGTTCGTGCAGTGTCAGTTTAGTAATTTCACGGAGACTCAAGCGGAGTGTTTGCTTAAAAGGGTTCAGGTCAGAGGGTTTCACGTCGAGAAGAGACAGGGCTCAATGTTCCTATATTGGCAAAGAGGGGAGTTGGGCTCTGTTTCTGCCTGGAAATGCTGA

Protein

Gene

>AfisC8G00698
AAGAGAGCTCTCAACTCAACTGTACATACAACAGTCCCCTTCTTCATTTTGCCCCCTCCACTTCCATATTTTAAGAAACCAAAACAAAACAATAGCAACCAGCTGAAGAAGCAACTTCAAAGAAGAGGAAGAAGCAACTTCAAAATATATATAATATGTCCTCCAATCTTGTTTTTTTCCTCCCTGTTTCATTCTAACTCAGATCTTTATCTCTCCCTGCCAACCATTTCGGATCAAAGAAAACCCCAAAAATAACCAGTGAAATCGATAAAAATCAAATCTTGATGTTCAATATCTTCCAACCAAACCACTGGATTTCCGCAACTAACAAAAAGTTCGACGCTTTCGACAACAATAGTATAATCGCCCGAAGCCCGAGCTCTAACTCCACCCTGTCTTCTCACTGCACTTCCGACACTTCCGGCGTGGCGGCCGCCGCCACTTCCACCGCCGCTGCCGCTTCCGCCAAACATGATGAGCTGGCTTCATCCACCGAGTTTCAACCTGCTACTTTTCCTTCCATCAACGATGACTGGGAGAATTTACTCTCAGCCCCTAACGAAGAACAAACTTTCCTCGGCTGGATCATGTCGAACGAGCAACAAAATGTCATAAACCCCTCGGATTTCGAAGGGTTTTCTAACTTACTCGAGCCCAGTTTCCAAGAATTCGAAATTGACAACCCCGTCTCTTTCCTAGGCGACAATGAAAAATCCACGTTTAATCCCGTACCGGTTCAAAACCCGTTACTGTACAACCCGACCCGACAACCCGATACCCACTACCTCGTTCCTCCGAACCCGAAACGCCTCCACTCAGCCGCATTTCCACAGAGCAACATCGTGCAGCAGCAGCGTCCTCCTCCAAAGCCGAAAGAAGAAACCGTAACAACAATAGCGCAGCAGCAACAGGTCATCGTTGACCAGCTATTCAAGGCTGCGGAGCTTCTAGAAGCTGGCAACCCTTTCACTGCGCGTGAGATATTGGCGCGGCTCAATCAGCAGTTACCCCCTTCTTCCCTCGGGTTGAAACCCATCCTAAGATCCGCTTTCATCTTCAAAGACGTCCTCACCTCCATCGCCACCGGTTCACGTCTGAACCCGAATCCGTTATCAAATCCATGGGACGTCGTCTTCAAGCTCAGCTCATACAAGGCCTTCTCAGAGGTGTCACCATTGATCCATTTTACCGATTTCACCTGCACCCAGACTTTGCTAGAAGAAATCGGGTCCGATGACTGCATCCACATCGTTGATTTCGACATCAAAATCGGAGGTCAGTGGTCTTCCTTCATGCAAGAGTTAGCCCATCGGAGATCCAACAACGGCACAATTCCATTCCTCAAACTCACAGCAGTCGTCTCGGTTCCGGGTTTCCACCCGTTAGAGCTCCAGCTAACCCGAGAAAACCTTTCTCAATTCGCTCAAGAACTCAGCATCCCCTTCGAATTCAACTTCATAACCATCGAATCGTTCGACCCGAACGAGTTCCTAACCACTAACGAATCCATAGCAGTTAATTTACCTATTGGGTCTCACTATGTTCATACTCTACCCACGATCATCCGTTTGGTCAAACAGATGAACCCGAAAATAGTTTTGTCAGTTGACCAAGGGTGCGATAGAAGCGACCTGCCATTTTCGCACTACTTCCTACACACGTTTCAGTCATGCATGGTTCTTCTAGACTCTATAGATGCAGCAGGGACAAACGCTGATGTGGCGAGCAAGATAGAGAAGTTCTTGGTTCATCCGAGGGTTGAGAGTTGGATCGTGGGCAGGCATCGTGTGGTTGAGAAAGTGCCACCTTGGCGAGCCATGTATGCATCGGCCGGGTTCGTGCAGTGTCAGTTTAGTAATTTCACGGAGACTCAAGCGGAGTGTTTGCTTAAAAGGGTTCAGGTCAGAGGGTTTCACGTCGAGAAGAGACAGGGCTCAATGTTCCTATATTGGCAAAGAGGGGAGTTGGGCTCTGTTTCTGCCTGGAAATGCTGATTGATTCTTGGTTCAGGCATGTTGTTATATGTATTTTCACTTCACTAGTTTTTCTTCTCTTGATGTTGTTGTCCTTAATGGTTATGGATTTTATCATATAATTGAACAAATGTCCATGAACTTTTTAACTACTACCAGCTTCTTCTTTCTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247818.1	5.4e-143	scarecrow-like protein 6, partial
Swissprot	O81316.1	4.2e-76	SCL6-IV
trEMBL	A0A5P1DZF8	3.9e-143	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00150.1	36.23	1e-77	288	ATHAM3;HAM3;LOM3;SCL6-IV	GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00698	AT4G00150.1	494	273	14	83	569	97	555	36.23	1e-77	288
AfisC8G00698	AT2G45160.1	385	195	10	205	569	262	640	42.60	1e-76	284
AfisC8G00698	AT3G60630.1	526	283	18	82	569	105	623	37.64	4e-71	266

Ortholog group

Species	Genes
Allium cepa	g188035.t1
Allium fistulosum	AfisC8G00698
Allium sativum	Asa0G02944.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	212	568	281.0	1.2e-83

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006351	P	transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0010224	P	response to UV-B
GO:0043995	F	histone acetyltransferase activity (H4-K5 specific)
GO:0048768	P	root hair cell tip growth
GO:0051301	P	cell division
GO:2000028	P	regulation of photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network