result

Gene information

Detail information of AfisC8G00781

Location

Gene	Chr	Start	End	Strand
AfisC8G00781	chr8	155992600	155994275	-

Sequences

CDS

>AfisC8G00781
ATGGCAGCTGATCAGGAAGGATCAGAAAATCCAGACCTTTTGGACTGGTTCGATGACCCACTCCAATTTCTCCCATCATTTCTGGAAGATCAATACTCGATATCAGACAACTTCCCAAATATGGATTGGTGGGCTGACCAATCATTGGACCCAAACCAGGACAGTACCTTTGAGCTCCCAACTGCAGCTTCAGCCACCGACTCTCCAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCAAGAGTACTGCAAAAAAAGAAAGAGGAATGAAAAGGGCAGTACCAGTGCTAATTTACCAGAAAGCAGCAGCAGGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAACAGCAGTAGCAAAGAGGTGAGATGGGCAGAACAGCTGCTAAACCCTTTGGCAGCAGCAATTGAATCGAACAATTTGTCACGTGTTCAGCATTTGTTTTATGTTCTACAAGAGTTAGCATCACCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTGCGCGCCTTAAGTCAGCATATTGATGGTAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACGTTTGCCACTGTTGATCCAAAAACATTCCGCTCCTCCCTGATAAAATTCCATGAAGTCAGTCCATGGTTCTCCTTCCCCAATTTCCTGGCAAACTCCTCTATCCTCCAAACCCTAACCTTTGTGAACGCTCAACAGTCTAAAAGTATCCACATCGTTGATATTGGTGTCTCTCATGGAATCCAATGGCCAACGTTTCTTGAATCGCTATCACGCAGGTCCAACAGCCCTCCCCCACTCATCAAACTCTCAACGGTCGATGTTGACTCGACACAGCCCGCTCCATTTTCATCTGCACCGCCTGGTTATGATTTCTCCGACCACCTACTCCGATATGCAAAATCTCTAAACCTCAACCTCGAAATCGAACGGATTTCCTCCATAGCAGACATTGTCCAGTTAAACCAGCCATCAATTCTCGTGTTCTGCATACAGTTCAGAAACCCTAGCAGATCTATATTAAAATCGGTCAAAAGCATGAAGCCTGACATGGTGATCCTGACGGAGATCGACGACGGTGGAGGGGAGGATGAGGTAGTCAGCTTCGCGAAGAAGGCGGAGAATGCTTGGAGGTTTCTGGAATCGACAAGCGCGGCGTTCAAAGGGAAAGAGTGCGTGGAGAGGAGGGTGATGGAAGGGGAGATGGCCAGGGTGTTGGGGAACGAGTTGAAATGGGAGAGGAGGAGGGAGAGGATGGTAGGGTTAGGGTTCGAGGAGGTAGGATTTGGAGAGGAGGCGGCCGATGGCGGGAAAGGGCTGTTGAAGAAGTACGATGGAGGTTGGGAGATGGTCAGATCGACGGCTGGGATTGCGTTGTGGTGGAAAGGTTGTTCGGTGTCGTTTTGTTCCATTTGGAAAGTGGGGAAGACCGAGGATTAA

Protein

Gene

>AfisC8G00781
CTGCCAGTCGAAACTCCAGTTATAAATTTAAGCCTGTTATTATAATCCTAATCACTGTCACCCCTTCTCGGATTACCAATCTACACGAATCAACTTTATCAACTCTCTTAGCATTACAAGTAAGCACACAAGACTTTACAGAAGAAGAAAAAAACATGGCAGCTGATCAGGAAGGATCAGAAAATCCAGACCTTTTGGACTGGTTCGATGACCCACTCCAATTTCTCCCATCATTTCTGGAAGATCAATACTCGATATCAGACAACTTCCCAAATATGGATTGGTGGGCTGACCAATCATTGGACCCAAACCAGGACAGTACCTTTGAGCTCCCAACTGCAGCTTCAGCCACCGACTCTCCAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCAAGAGTACTGCAAAAAAAGAAAGAGGAATGAAAAGGGCAGTACCAGTGCTAATTTACCAGAAAGCAGCAGCAGGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAACAGCAGTAGCAAAGAGGTGAGATGGGCAGAACAGCTGCTAAACCCTTTGGCAGCAGCAATTGAATCGAACAATTTGTCACGTGTTCAGCATTTGTTTTATGTTCTACAAGAGTTAGCATCACCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTGCGCGCCTTAAGTCAGCATATTGATGGTAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACGTTTGCCACTGTTGATCCAAAAACATTCCGCTCCTCCCTGATAAAATTCCATGAAGTCAGTCCATGGTTCTCCTTCCCCAATTTCCTGGCAAACTCCTCTATCCTCCAAACCCTAACCTTTGTGAACGCTCAACAGTCTAAAAGTATCCACATCGTTGATATTGGTGTCTCTCATGGAATCCAATGGCCAACGTTTCTTGAATCGCTATCACGCAGGTCCAACAGCCCTCCCCCACTCATCAAACTCTCAACGGTCGATGTTGACTCGACACAGCCCGCTCCATTTTCATCTGCACCGCCTGGTTATGATTTCTCCGACCACCTACTCCGATATGCAAAATCTCTAAACCTCAACCTCGAAATCGAACGGATTTCCTCCATAGCAGACATTGTCCAGTTAAACCAGCCATCAATTCTCGTGTTCTGCATACAGTTCAGAAACCCTAGCAGATCTATATTAAAATCGGTCAAAAGCATGAAGCCTGACATGGTGATCCTGACGGAGATCGACGACGGTGGAGGGGAGGATGAGGTAGTCAGCTTCGCGAAGAAGGCGGAGAATGCTTGGAGGTTTCTGGAATCGACAAGCGCGGCGTTCAAAGGGAAAGAGTGCGTGGAGAGGAGGGTGATGGAAGGGGAGATGGCCAGGGTGTTGGGGAACGAGTTGAAATGGGAGAGGAGGAGGGAGAGGATGGTAGGGTTAGGGTTCGAGGAGGTAGGATTTGGAGAGGAGGCGGCCGATGGCGGGAAAGGGCTGTTGAAGAAGTACGATGGAGGTTGGGAGATGGTCAGATCGACGGCTGGGATTGCGTTGTGGTGGAAAGGTTGTTCGGTGTCGTTTTGTTCCATTTGGAAAGTGGGGAAGACCGAGGATTAATTGGAGGGAAAATTATTGTTTTCCATTTTGGATGAGTTTTGTACCATA

Functional annotation

Database	accession number	e-value	annotation
nr	RWW90197.1	1.8e-107	hypothetical protein BHE74_00000657
Swissprot	A1DQP9.1	1.2e-92	Protein NODULATION SIGNALING PATHWAY 1
trEMBL	A0A804KXD0	4.3e-106	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13840.1	40.91	4e-86	315		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00781	AT3G13840.1	506	254	16	13	484	16	510	40.91	4e-86	315
AfisC8G00781	AT4G37650.1	402	244	13	125	484	137	529	26.62	1e-30	131
AfisC8G00781	AT3G49950.1	398	233	15	130	483	26	407	26.38	9e-24	108

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	132	484	164.7	2.6e-48

Gene Ontology

Accession	Ontology	Name
GO:0007165	P	signal transduction
GO:0005488	F	binding
GO:0006351	P	transcription, DNA-templated
GO:0009725	P	response to hormone
GO:0031323	P	regulation of cellular metabolic process
GO:0033993	P	response to lipid
GO:0042446	P	hormone biosynthetic process
GO:0044763	P	single-organism cellular process
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:1901701	P	cellular response to oxygen-containing compound
GO:2000032	P	regulation of secondary shoot formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network