result

Gene information

Detail information of AfisC8G00836

Location

Gene	Chr	Start	End	Strand
AfisC8G00836	chr8	166419018	166420938	-

Sequences

CDS

Protein

Gene

>AfisC8G00836
TTGGACACCATTTAAAAGCAGCAGCCCTTATCTTTCGCTTTATTTACCGTTCATCTTCTCTTGCTATTTTTTCCTTTCAGAAGTTAAAAAGGAAAAGAAAATTATAGTATAAAGAACTGACAAATAAAACCCTCCTCACTTTCTCCGTACCAAACCCTAGCTTTCTTACAATGGTTGCCAAAGGTACCGACGAGAATTTCTCCATCGACGACCTTCTTAACCTCTCCAACGACGAAGAACTTGACGCCCCATCCATCACCGGCGACGACTCAGCCAATGGCGAAAAGTTTGACGTCGTCACCGCCAACGACGGCGAATTTGACGGAGGTTCCGATAAGGCAAAGGAGAAATTGAAGGGGAAGGTCGAAGGTGCCGAAGAGCGCTCCTGTGGTCCTCACGCTGATGCCAGCTTGTATGGTGAGCTCTGTGTGCCGGTAAGACTTTCATTCCCTTTTTTGTTTCGTAATTTTTGGTTAATTTGGGAATGTTGCGGTAAATGAGCGGAGAAATCGAGAATTTGGTGTTATTCTTTTGTTCATTTTATTTCTATAGTGATTGAAAGAAATTCATATGTTTTCATTAGAAGAATCCAAAATGAAAGTTAACACTGCCCCGACTGTAAATGTGATTTTTGAGCAAATACTGTCCAAGAAAGAAAACCGATTCATACTTTTTCACCTTTTCTCCCCTATTTTCATGAGTGCATGTAAGAAAATCCTTATGGTAGCTAATATTATTTTCTTTAATTATTCCCTTATTGTAGCATAATTCATAGTCTGCAGTATGTTCGTTTTAGTCGAGAATTAATGTAAACCTTAAACTTTCTAATTTGGTGAGAGTTTTTAGGAAAGGAATCAAAGCTTTTAAATACATTTTGCCAGGGGATGAACCATTTTCCAGTTTTGTTCACAAAAGTAATTACAATGGCGTCAGCATGAAATATCAAAATAATCACATTTCTGTATAAAATTTTCAACTTATAGCATGAACAATTAGCGGAGCTAGAATGGGTATCAAACTTCTTGGACGAATCGCTATCACCCGAAGACAACAAAAAGCTTCAACTCATAAGAGGAACGCATACACAATCCGTTTCGGTTTCCAATTCATTCTCGGGTTCAGGTTTCGATTCAGGTTCAGGTTTCGATTCGGGTTCGATCTCCTCATCGCCCGAGGACCCCATCCTCCACCATAGAAGAAGAACAGGGACCAGAGGGCGCAGGCCAGCGCTGAACAGCAGGTCATCCGGTCCCGGGATAGCAGATTCTGATTCAGAACCCGGAAGAAAGCACCCAAAACCCGTTAAGAGGAAAGGGTTGGCAAGTGAAGGGATGAAGTGCACCCACTGTGGCACGGAGAAGACACCGCAGTGGAGGTCCGGACCTAACGGGCCGAAAAGCCTGTGCAATGCTTGTGGGGTTCGGTACAAATCGGGCCGGCTCGTACCTGAATACAGGCCCGCCGCAAGCCCGACGTTTGTTGAGTCGAAGCATTCAAATTCGCATAGGAAGGTGATGGAGCTGAGGAACAAGAAGGCCATGATGATGCAGAATGGGCTTGTGAATTCTGAATTTGAATAGAGAATTTGTTAGTGTTAGTGAGAAGTAATCTCTTATTATGGAGATTGATTAGTTAGGATTTTAGAACTGTTGGTTTTTATTGGTTTTTTTTCTTCATGTTTTATGAGTTGATTAGAACTCTTCTTGGTTTATTTTCGTGTTTGCTTCGGTTTTTTTTTAGCTTAGACTGAAAGAGAATAAGATGAAATGAATGGTTGCTGTGGTGTTGTTGGTTATGCTTTAGTTTATGTGCTTCTTCGGATTCTATGTTTGAGGTTATTATTATGGAAATGGAATGATGAAGAATAATCATAGTTGCTGGTATATTTTCTAATCAAATGTTTGAAATTTTATGTTTACAA

Functional annotation

Database	accession number	e-value	annotation
nr	MQM02842.1	4.9e-44	hypothetical protein
Swissprot	O82632.1	1.6e-39	GATA transcription factor 9
trEMBL	A0A843VZE1	3.5e-44	GATA transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32890.1	37.76	6e-44	174	GATA9	GATA transcription factor 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00836	AT4G32890.1	286	138	5	1	274	9	266	37.76	6e-44	174
AfisC8G00836	AT5G25830.1	227	91	6	80	274	66	288	44.05	2e-40	163
AfisC8G00836	AT3G60530.1	200	61	5	84	272	66	225	44.00	2e-35	145

Ortholog group

Species	Genes
Allium cepa	g17314.t1
Allium fistulosum	AfisC8G00836
Allium sativum	Asa1G04176.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	207	241	65.5	2.1e-18

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network