result

Gene information

Detail information of AfisC8G00857

Location

Gene	Chr	Start	End	Strand
AfisC8G00857	chr8	171022392	171023643	-

Sequences

CDS

Protein

Gene

>AfisC8G00857
ATGTTCGGAAGGTAACTACTGATATGGTATTTCTTCGTGTTTCCAGATTTTCATGTTGGATCTTTAATCGATGAGGCAATTCATTTTAACTTGGCCTGGTCGACGATCCGAAGTGCTAGAGGCCACACCTCTCAGCTTCCTTTATGTAAGCAAAATTTTGAGTTACTGTCTGGGGATTTAGTTGATGAATTTGTGAACAAGTTGTAGAACTTAACCATGGTTTGGCTAAACTTCATATTGCTCTTCAAATTTTAATTTTATTTCCAGTTCAAAGGTTTTTAATTTAAAGTTGAATTGGCATTTCAATAAACTCACTCAACATTTTTGTTAATTATAAAACTTTTATTCAACATTTTTGTTAGTTATAAAACTACACTTGCCATTCTTTAAGAGCAACATTAAAGCCAGATGTTTGTACTAATAAGAGTGGAGATGGTAGATGTTATTTGGGTTGCTGTGTGTTTATCAGTTGTAGGATCCTGGTATAGAAGCGGTTCCTTGATTTCAATGTTTGTGTTATTGTAGGATTGATAGTGCTGGAGTAATTGCTAGAGCGAAAGATTCTCTTAAAGGACACCTTGACTTAATCCTTGGTTTCAATACTTTCTTGCCAAAAGGATACGAGATTAAACTTCCTGATGCAAAGAAACCAGTTGAATTTGAGGAAGCTATAAGTTTTGTTAACAAAATTAAGGTTCATTTCTTTATCTTTTGTATATAGACAGAATTTTACAGTATGGATCACTTTAAAACCCATATTTGTTTCATGCTAACTTCTTGCTTTATTAATGGGATTGCAGAGCCAAGCTTCAGCCATCAATCTCCACAACTCCACCAGTGTTAAATATTAGGTGAAATAAAAGAACCAGATATACAGGTATTGATTCTAACCTTAAATTCTTTTAGGTTCACTTTCGAATTTTCTTTTCTTCTTTTGCGTTAAACCGAGTCGGTATATTTTTTCCATTAAAATTTAGGGCTTCAATAACTTTTTAGGGGATTTCAAAATTTGAAACCAGGTCCAATTTAGATGTAATACATTTTGGTCCACAATGGCTTGCATGTTATGGAAAATATGTTAATCAAAAGCACATTCACTATTCTTAGGTTATTTTTCAATGTTTTGGTATACGCTAAAGTTTTTAGGTAGTGGCAACTCCAATTGGTAAAGGATTGACAATGAAAACTTTAGAACAATGACAGAATGATGAAGGAAATTTTGTCAAAAAATGAGGTAAGAAACAACTTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020600374.1	2.5e-19	paired amphipathic helix protein Sin3-like 4
Swissprot	O48686.3	1.7e-17	Transcriptional corepressor Sin3
trEMBL	A0A835SAC2	2.4e-19	HDAC_interact domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G24190.1	65.71	2e-19	90.1	ATSIN3;SIN3;SNL3	SIN3-like 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00857	AT1G24190.2	70	18	1	4	67	47	116	65.71	2e-19	90.1
AfisC8G00857	AT1G24190.1	70	18	1	4	67	47	116	65.71	2e-19	90.1
AfisC8G00857	AT1G70060.1	71	18	2	4	67	47	117	64.79	3e-18	87.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02671.18	PAH	Repeat	4	32	23.8	3.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001102	F	RNA polymerase II activating transcription factor binding
GO:0001106	F	RNA polymerase II transcription corepressor activity
GO:0002218	P	activation of innate immune response
GO:0002230	P	positive regulation of defense response to virus by host
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0004407	F	histone deacetylase activity
GO:0004672	F	protein kinase activity
GO:0007275	P	multicellular organism development
GO:0009941	C	chloroplast envelope
GO:0010243	P	response to organonitrogen compound
GO:0016575	P	histone deacetylation
GO:0016580	C	Sin3 complex
GO:0031937	P	positive regulation of chromatin silencing
GO:0032550	F	purine ribonucleoside binding
GO:0032559	F	adenyl ribonucleotide binding
GO:0042754	P	negative regulation of circadian rhythm
GO:0043168	F	anion binding
GO:0043234	C	protein complex
GO:0044255	P	cellular lipid metabolic process
GO:0044877	F	macromolecular complex binding
GO:0045171	C	intercellular bridge
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0065008	P	regulation of biological quality
GO:0071310	P	cellular response to organic substance
GO:1900181	P	negative regulation of protein localization to nucleus
GO:1901675	P	negative regulation of histone H3-K27 acetylation
GO:1901701	P	cellular response to oxygen-containing compound
GO:2000678	P	negative regulation of transcription regulatory region DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network