Gene information

Detail information of AfisC8G00964

Location

Gene	Chr	Start	End	Strand
AfisC8G00964	chr8	193928416	193928718	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	THU67195.1	3.2e-22	hypothetical protein C4D60_Mb05t22090
Swissprot	Q6EPP9.1	1.2e-23	Transcription activator GRF10
trEMBL	A0A427BAM9	2.3e-22	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37740.1	62.69	2e-21	97.4	AtGRF2;GRF2	growth-regulating factor 2

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00964	AT4G37740.1	67	24	1	8	74	215	280	62.69	2e-21	97.4
AfisC8G00964	AT2G22840.1	54	13	1	11	64	187	239	74.07	3e-21	96.7
AfisC8G00964	AT2G36400.1	48	9	0	17	64	140	187	81.25	6e-21	95.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08879.7	WRC	Domain	22	64	79.2	1.2e-22

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005509	F	calcium ion binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048366	P	leaf development
GO:0048528	P	post-embryonic root development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network