result

Gene information

Detail information of AfisC8G01253

Location

Gene	Chr	Start	End	Strand
AfisC8G01253	chr8	257761949	257763382	+

Sequences

CDS

Protein

Gene

>AfisC8G01253
CTAAATACCAGACCACTAGCTAGTGTCTAGTCATTATTACCAAATGCAAAACTACATTTCAAACGATATAGACATGGATTGCATGTCTTCGATTACAACAACAGAGAAAACAAGAATAGAGGAAGAAAACATGGATTTGAGAAGAGGTCCTTGGACCGTAGATGAAGATCTTGTATTAATCAACTATATTTCTATGCATGGTGAAGGCAGATGGAACTCTCTAGCTCGTTCATCAGGTTTCTAACTAATGATAAGCATGTATATAAGTCACAACCATGCAAGAAATTTATTTGTTCTTGCTTCTTACTAACTCGGATATTATTATGCAGGTCTTAAAAGAACAGGCAAAAGCTGTAGACTCAGATGGCTGAACTATCTAAGACCAGATGTTAAAAGAGGCGACATCACTCCCGAAGAGCAGCTTATAATCCTCGAACTTCACTCTCGATGGGGAAATCGGTAATTTTAACCCTTATCTTTCAACATTTTAAATGTAGTGTTAGAGCAAACCCAATACACAATTGTTAGACAAATCGCTATATTCAGCTACTAAGTAGTAAGCAATTATCCGAATTTTTGAAACTCCGCTAAGGGTTTTCTTTATCATTTTCTGCATTTGTACAAAAAAGATAAGAACATGATCTTGGTCAACTCAGCAAAGTACCCAACACTATAATTGGGATGTTCTTAAAAATTAACTAACCAAAAATGTGAACCTCAGGTGGTCGAAAATAGCACAACATTTACCAGGAAGGACGGACAACGAAATAAAGAACTACTGGAGGACCAGAGTGCAAAAGCACGCAAAGCAGCTGAAGTGTGACGTGAACAGCCAGAAGTTCAAAGACGCCATGAGATATCTGTGGATGCCGCGCCTGCTTGAGAGAGTCAAGGCATCCAATAATAATAATAATAACAACAACAACTTGTGCAATAAAATGGATTCAAGCATTATGCAGAACACATTGAGGACGAGCACGGGCTGCCCATCGACTGGGCCGGTGGAGCCCAGTGGGGCTGGGCCGTCTTTTGAGTCGTCAAGTGATATGGTCACCGCTGCAGGTGGTTTAGAGGGAGGTGACGGGCACTGGGGTGGTGAGTTTGGGGAGTATTGGTGCGATTCTATGGCGGCGGGGGGTAGTGGAGATTTTGGAAGTGATGTGGGAGTGTTTGATTTTGATTGGGGGCAAAATGGGGATTTCGGCGAGAGTTTGTGGAGTTTGGATGATAACTGTTGGTCCATTTGATTTCAGAAGTAACTTCTAACATTGCGTGGAAGAAAAACTTCAGACTAAACGTCAATTATGGATCATTCGTTGAAAAATGTATACCTGTTTTGTGCATGTTGAAAATTAAACTTACTGTTCAATTTGTATTAACGTTCTTCGATGTATAGCACAAAATCCAAATTTAACTGCTGTTATAACTTCTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020086902.1	4.5e-74	transcription factor MYB108-like
Swissprot	Q10MB4.1	2.4e-72	Myb-related protein 2
trEMBL	A0A6P5ETU4	3.2e-74	transcription factor MYB108-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G48000.1	74.83	2e-66	249	AtMYB112;MYB112	myb domain protein 112

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01253	AT1G48000.1	147	37	0	30	176	30	176	74.83	2e-66	249
AfisC8G01253	AT5G49620.1	147	24	1	21	167	16	161	82.99	1e-65	246
AfisC8G01253	AT2G47190.1	261	112	5	27	282	15	259	49.04	5e-64	241

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	34	81	56.2	2.5e-15
PF00249.28	Myb_DNA-binding	Domain	87	130	56.8	1.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009585	P	red, far-red light phototransduction
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009813	P	flavonoid biosynthetic process
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009892	P	negative regulation of metabolic process
GO:0010090	P	trichome morphogenesis
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network