result

Gene information

Detail information of AfisC8G01543

Location

Gene	Chr	Start	End	Strand
AfisC8G01543	chr8	317506065	317508253	-

Sequences

CDS

Protein

Gene

>AfisC8G01543
TTCCTTGGGGTTGTATTCTAGAAAGCCATCGCCTTTGCTGGAGATGCTCGAGGTGAGTTTGAATCCGATCTCTTAATGAAGCTAATCATATCTGGATGAACATACTGCTTCCGTGGCACTTTCTGGTGGTGCTCTACTGCCTTCGAGGTATTGTCAAGTACATTGACTTTGTCTGTTTGAACTTTTCAAGTTGAACTATGATGTTTTGTTGCTCTTGTTTTCATGGAATAGATTTATTACTTAGCATGGTTTGGTGACGATGAAGCCTGCGTTGGTTGTTAAGGTGGCATGCTGGTGTTATATTGAGATATATTGAATACGATGATGCAGATTTAGGCTGACGGTGATGCTAATTGGAGATCACTATGCTGCCATAGGAAATTTTGTTCTTTGATTGTTGAAGTTTGAGTGTTGTTGCTTTGAGCTAGTCACGGATAGAGAAGAAAAACTCCAGCTACGGAAGAAACTGCAGTATTGTTTGAAAAGCTTAAAGGTATATGATTGCACCTTTAAGCCTTTGTTATTCAGTTTTGACAGTTGCATTAATGTTTCGTCCTTCTGTCCCTTAGCAATAAAGTCTTATTAGATTATACATAGAAGGGCACGTATGAAACAAAGAGGGACCAGAATATTTTTTTCTTCTTTCTATTCCTTCTTCGCATGAAATGTATACAGAACCAAACATTCACCTTTCTTCTCTACATGAAAGTTGCATACACATTTCTTTAAGATACGTAGAACACATTTCTTTTTCAATTTTTTTTATTGTTCTTTGAAATGGAGACACATTTAGCACGCATGAAACAAATACGTTTTTACACTTTTTCCTCCCCATGAAACACACGCACGCACATTTCGAAATGAAGACACACACATGAAACAAAAGGAAAAACATATACATTTTCACCTTTCTCTCTACTAAACAAAAAGAACACAGCAGGCCAAAGATGGGCTCATTTTTTTACATTTCCATTTTACATGAAAATGAAAATACGCATATATTTTTTTGGAAAAAATATATGTGTGGTTAAATTTTCTTGTTTGAGTGAATGCTTGGTGGGTATGCAAGTGGTGTGTGATTATAAACAACTCCCGTTCACACCACCTCTCCCAATTATAGCCCGTGAGCATTTTAAGACTTATTGTGTATTGAAAATAAAAAAGTTGTACAGATTTGACTTATGTCCGTATAAGTACATTGAGAATATAGCGACACTTGAAGCAGTTTTATTTTTTGCACCAGATCGGCTCAACTTTTAACCAATTAAATTCACCTTGACTTTTATAGATGGAATAACTCATCTTTCTTAATGCACCTAAAAATATGTTCATACATTCTAAAAAATAAAGTTTATTTTTAATCCAAGTCATTTGAAAATTGATCTTTGGATCACTTTTACTGAAAGCTTTGTCCATATACTAAGTTGTAAGGGGTAATACTAACAATAAGTTACGAAATTAATCATTCCTCCAACCTTTTCAAAAGGCTCCCTTTCAAATAGAATGGGTACTATTTTCTTACTTGATATATCTATATACATGTATCTTTCTATATGTTTCCAATTACACGAAAAATGATTTAAGTTTATTTACGACCTTAATTATGTGCTGTCATCCACTTGATTGGTTAGCTTCAATCCTTATATCTTTTACTCTATTAGTTTTTAATCTCCTATTACTGAATTCAGCAGGGGTTGAAGAAAGCGAGGAGGTGCTGGTCGCTGGAGCTTCATCGGCGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGGTAAAAATTGCATCTTTATTTTGAAATTTACAAAAGAAAGATGACTTTTTTAACTTTTTGTTATTTGTCTTGGAAATGCAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGACCAACGATGAAGTTAAAAGCCATTTACAGAAATACAGATTGCATACAAGAAGGGTAGTGCCAAATACGACAAGTTCCGCTATGAATAGAAGCTCTGTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAGTCGCATCAATTAGGGTCGCCACAGGGACCTTTTCAGATGAACTTGTGTTCTCGAGCAATGTTTGATAGCTGTGAAGATGATGGGAGAGCTGCAACTAGAAATGATTGCGAAGAAAGAAGAAGAGGAGGAGGAAGGAGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	4.9e-37	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q5VRW2.2	9.9e-27	MYB-domain transcription factor NIGT1 homolog 1
trEMBL	A0A8T3B8E8	2.6e-32	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	68.48	7e-31	129		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01543	AT2G03500.1	92	28	1	6	97	232	322	68.48	7e-31	129
AfisC8G01543	AT1G49560.1	118	35	4	3	108	188	301	56.78	6e-29	122
AfisC8G01543	AT1G13300.1	94	28	2	4	94	178	269	64.89	1e-28	121

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	9	60	30.1	3.7e-07

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0004821	F	histidine-tRNA ligase activity
GO:0005634	C	nucleus
GO:0006427	P	histidyl-tRNA aminoacylation
GO:0009507	C	chloroplast
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043565	F	sequence-specific DNA binding
GO:0048449	P	floral organ formation
GO:0055062	P	phosphate ion homeostasis
GO:0080022	P	primary root development
GO:1901699	P	cellular response to nitrogen compound
GO:0090701

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network