result

Gene information

Detail information of AfisC8G01688

Location

Gene	Chr	Start	End	Strand
AfisC8G01688	chr8	341992899	341998374	-

Sequences

CDS

Protein

Gene

>AfisC8G01688
ATGGTGCAGTCAATCCAAGGGTATGAGGTGTTATATCGTAGAGTAACGATAGTTCATGTAGAGAAAGTAAAGTGGGGAAGGTAAATAACTCCAAGACTTATATAGTAGTTTGGGCAGAAAGTCCCTACATCCACTGTCCTTTCCCTCTTTAGTCACTCTTATATTGCTGAGAGGCCTATTACATTGAACTAGGCATTTCTGACATTAATGAGTTTTTGAATAGTGCTCTAATATAGGAAAGTACTATAATTTCATGTCAACTCTTTATATGCCAAAAATCTCCCTTTACTGTAGTAGGTGATCCTCTATTTATAGCAAATTTAAGGTCCTTCTATTGTGCAAGGGTGTTAACTCAGATTGATGACCTAGCCTGCTATAGGCAGCTCTGATTCAAGCACCTGTCATATTTTGGTTAAAATATTTCACACGGATAGCTGGCGTGGCACTTTAATGTAGGAATCCTTTGATTTCATTCGTCTATCTCGACCGTAGATCTTGGTTTGGGTTATTTGAGCCGTTGATTGTTGAGATTTTTTAGGGCTGCTCCTGGCAGTTATTGCTCTCGGTTAAGCTTTTTGCTTTATTTAGACAATAATCTCAGTCTTTGTTGTTGCCTGAACCCATGTTCTTGGCCTACATGCTCTTGAATACTAAGTCCGGTGCCAAATCTTTCGATGGAAACTAAATAATCTGTCCCATAACTACAAGCCATGGAAATCTCTCCTTGAATATTCGTAACTTGTACCTTGTGGAAATTATGGTGTAACAGCAACAAAATAGAAGTTTGCCCACTGCAAGGGGCCAACGATAATTATGTAAACATTATACTTATGTGAAACATATCCAATTGCAGGGCCTGTGGAGTATATACACTTGTGTATAGGTGAAGGGATCCCTCTATAGAGTCTACTTCAATGAACTAAGGGGAGGGTATTATCATAATTGTGTTAGGAAATCTAAATAGGATAGTAAGCGGCTCGACGCTATGCCAGTATGTGTTGGTACAAAATCAAGAGCAAGAACTGTACATAGGTTGAGTGCATCGTCGGTCCTGCGTGGTCAGCGGGGAAGACAAGGTTACACCTAATGGACTATGCCTCCTACTAGGGTAGGTCCCGTTCGGTAATGCATCACCATAGTTGTTTGCTAGTTTGTTTGTTGGGTTAAGGCTAGTTAACCCATAGAAGAGTTCTTTCAAAAACGAATGGGGTGGTCAGAGGAGCTGAGTCTTCTAAGCACAAGTAGTAAATCCCTAAGGCAAGACAGAATAAGGATAAGCTAATATAACACCGTATTATGCAGTATGAGACGCAAGATGAGGCATAAACTACCATTGAGAGTTCAACATAAAGGAAGATGATAAGACACACTAGGGAGCCAACATTTTGGGTTCCCCTCCCCAATGTGTAGTTATATGGGTGGTCGTAATATGAGATGTAGTTCCATGCGGATGTGATATTGCATTGATGATGGATCCTAATATGGTGCCAGATTATGGATGCTAGCGGGGATAGTATCTCGGCCCAAAAGGAGACTAGTACTTATATATATATCTGTGTGTGTGTATGTATGTAGTTATTATATACTTTGGGTAGACGGGGAATATCGTATGCGTACGTGATGTCGAGAGGACTAAGTAAATTTAAAAGACATAACATGTAATAGAAGAAAATCGACATAAACTAGTGTTATGTGTAAAGTGCATAATTAATTATAACATCTCTAATTTTTTATAACATTATTCAGAAGATTTAATTAGATAAATTAAATAGAACAATGATGATAAGGGAATTGAGATTTAAATAATTACATAATGGGCCATGCTTAACCATAAAATAAATGGGCTTAAAATTGGTTTATAAGATAATTAACTTACATAAGGCTTTATTAGTAAAAACAGCAGCACTTTCTATTCACGGCTATACATTTGCCTTTGTCCATTCACATCCATTTTATTTCTCAAATCAAAAACAGACACAAATTAAAGCTAAGAAGAGCCGGCCATTAATAAGGGAAAAGAGGAAGAAGAATTTAATCAAAGCTAAAGATCAAAGATAGGGGAATCAATCTTCTACAAATCTCAAATTCCTTATCATATCCAAGGTGAATAATAATTCATTCCATCTCGTTTTGGTTTCTAAAATCCTATGATATTTTGGATGATTATATGCTAAAGTTATTGATTGTTTGATTTACACAATTTATTTATATGCAAAATTCGTACGGTTTTAAAAGCAAAACCGAGGGTTATTGATTTTTAAATGCCATGGAAAATTTTTATGTTGAGTAAAATATGATTTTGGAGATGGGTTTTAATCTTCAGTATTTTCCAATATATGGAAATTTTATTACGAATTTTTGATGAAAAATAGGATACAATTGGGTTTAAAATTTATTTTGAATATTTTAGGAAGAAATTAGGTCTAAATTTTTAATATGTTTGATTACATGATGAAATCAAATTTCTATGATTTTTGGGCATTTTTCCCAATTGATTTACTAGGGGAAATAAATTATTTTAAAAGGACTTCTCTAAAATAATAGGTTTTGTTATATGGAAGGGCTTAAACGTTACAGTTTTTATAGTTTAGATCTGGTATAACTGTGGCGGTTTTAAATGTAAAGTATTTGAAAAGTTTTATGGCAGCTAATCAATGGTTTACAAATAGGCAAGTTGTCATAAAGTAATTACTAAAAGAAGCAACATTTCAGCCTTAATTCATAAAAAGGTGTTCCGCCTCAATTAGTAGCCCCTTTCGACCCCATTGATTCCGCTTCATCCTAGTCGAAACCTACTTAGTCGAAACCCACATAGTCGAAACCAATACACAAGGTATCACCTAGATGGTACGTAGTGGATTGGAAGGAAGGCAGAAGCCTTGGTGTCGAAAGGTAAGCTTCCGATGAGGTCGAAACCCTGTTTTATTTTCAAAAGTTAAAGACTTGCCCTGTTTTACTAAAAGCTTTCGACATAGTCGAAACACATGCTTTCGAAAAGGTTTTATGAATGGCTTTCGAAGAATATTGTTGTACTATGTAAAGGAGTTAGCTTTTGACGGAATACTTTTTCCTTAAATAAAAGCTTTCGAAAGGGTTGGTTCCGACCTAGTCGAAACGTAGTTGCTATTTTTCTTCCGAAGTATTAAAGTCATCAATACCTTCGAAAGGTTATCATTGCTTTTACCAAAGTTTAGCCGCTTCCTAATTGCTTTCGAAAGGGGTTGATGGTTTCGAAGGTAATGGACTCAAAAGGGGGTTTCCACTCTGTCCTTTAAAGGTTTAATTTTTAACGGTCTTTACTTTTGATTAGATGGTTCCGACACCATCAACTTTTCCCTAAATAAATTTTTTGTTAGTTTTGAAAGAGATACTTTCGTATATAACCATTTTGACCCGGTGTTCACTACACCAGAAAAGTCATTTCGCCACGGCTTTGGGCCGTGGCTAAACGATTTTGCCACGGCTTTGGACCGTGGCAAAATAGGCAGTGGCAAAAATTTTGCCACGGCCCTGAGCCGTGGCTGTTTTCTATTTTGCCACGGCTTTAGGCCGTGGCAATATTTAGATCAGCCACGGCTTAAAGTCGTGGCAAATATATGTTTTGCCACGGCTTAGAGCCGTGGCAAATTCATGATTAGCCACAGCTTAAGGCCGTGGTTAATTTTTGTATGTTACTCGAATCAATTAACCATCTCGGCGGTTCTTACTTCAGTTCAATTCAATACAAAATAGTGTCTCAGTTCAGAATACAGTTCACTGTTACAAATAGTTCAACAATTACAATACAATGATACATGAAGACAAAAGTTTTAGATGGTTCATCAAGTACAATACAATGATACATGAAAACAAAAGTTTCAGATAGTTCATCAAGTACAGTACAATGATACATGAAAACAACAGTTCAGCAACAATACATAATACATGCTACAAAGTTATAACTAATCTCCAGCATTGTTGTAAAGAGGCAATACATAATACAAGTACAGTACAATGATATAATAATATTTAGCACTATAAGGCATGTATTTCAACTTCAAGCTTCACATCATCCACTTCAACATCAAGTCCTATAAAGAGGAAGACAACTGTGAGGTTTGGGTACTTACTAATGAACAAGCCCTGTAAAAACACTCCCTGGAAAGTAAATGCATTTTGTGATTAAGTAAATTTGTACTTTCATTTTTATTATTGTGCTTTACAAATATTGTCTTCTTCCATGATGAAAATAATTGATCAACAAAATCTGTTCATTCCTTTCATCTTCTCAAATGTGGAAATCTGGAACATATAATCACAGAACATGAATTCAAACTTCTCAAAGAACTAGCTCAAGTATGAAAAATAAAACAAACCCATTTGAAATTTAAGAAAGATAAAGAACCATGTTAACAACTCGTATGCACACTATTACTCTACAGTATAACACAATCACTAACTGCTTCAGTCTGAAGCATGCACCTAGTTTGCACCTAGTTTTATCAAACGTTGGAAAAAAACATTTAAAATCCTGAGCACTACCCATAAATGAAATATTATAGTAGACTCATTTTTCGACCCAATATGTACTTCAGTTAAGAATAAACTCACTCAAATACACCTACATTGATAATTAACCCTAAACCTCTTTGTAATTAAATTATATTTCCCGGTGATACAAAAGATTTCACAAATAAACACTTTGATACCTAATCAACTGCATTTAACATTAATTACACTTCAACGTCCATGTATCTTAGGTAAAGACAATTACATCTTTTCTATTTAACCCATCTAAATTGTTAAATCAATCTTTGCAAGAGGCAACATAAACCAAAATATTTTTGAAGATGAGTTAGAATTCAAGATGATTTTCATCATGGAAGAAGACAATATTCGGCTCCATAACCTATTAGGAAATAAGTAATTATCTTATTGATACTATTAGTGTTTAAATTATAGCGGTGATGTAAAATTGTGATTTATTAAGATGGTGCATATCAATATGCAATTGTGTTCACTTTTAATTTTTTGCAGATGGTCATTAATAACAAGAAGATTGCCAGGGCGGACAGATAATGAAATCAAGAATTACTGGAATACTTACCTCAAGAGGAAAGTAACAGGTAAAACTTCATGTCAGCGATCTTCATCAACAGTAAAAACTGCTTTCCCTGAGAAACAAAATGAAAAAAAGAAAGAAAAATCAAACACTAATGTTACAAGTGCCAAGACACTAAAATGCACAAGATCTATAGTCGAAAATCAAATTCCAGTCTCTTCAATGAAACATTCTCCAAAGAATATTAGTGAAACTCAAACCGATCAACAGACTTCTGATTTCACGTTTAATTTTGCTGGACATTATGATCCTCAATTAAACACAACCAAAGACGATGTGTGGATTACAAAGCTTATGCAGAACTCTGATTTTCATCTACTGTCCAAGGAAAGCTCATACACTAGTCAAGAGAGCTTGCATAATATCGAATTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244599.1	2.7e-16	myb-related protein 308-like
Swissprot	A0A4D6Q4S0.1	2.4e-09	Myb-related protein 1
trEMBL	A0A8B8Z9E3	2.6e-16	transcription factor MYB1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G35550.1	29.51	8e-11	63.2	ATMYB123;ATTT2;MYB123;TT2	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01688	AT5G35550.1	122	71	3	17	133	80	191	29.51	8e-11	63.2
AfisC8G01688	AT3G27920.1	54	21	1	17	70	80	128	51.85	4e-10	60.8
AfisC8G01688	AT5G52600.1	80	37	1	17	86	78	157	41.25	1e-09	59.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	24	51	30.4	2.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009845	P	seed germination
GO:0009892	P	negative regulation of metabolic process
GO:0010091	P	trichome branching
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048629	P	trichome patterning
GO:0048658	P	anther wall tapetum development
GO:0048765	P	root hair cell differentiation
GO:1900384	P	regulation of flavonol biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network