result

Gene information

Detail information of AfisC8G01729

Location

Gene	Chr	Start	End	Strand
AfisC8G01729	chr8	352437950	352443049	+

Sequences

CDS

>AfisC8G01729
ATGGGTCGCACCAGAAAAGAAAACTATACTGATAAGTATTTGGTGGACGGTCAAGAAGAAAATGATGATGGTAGCTCAGGCACATCGATAGCAGATGGCGTAGTTTCAAGTTTAAAAAAGGGGCCCTGGACAGCTGCAGAAGATGCAGTTTTAGTTGAATATGTAAAGAAGAATGGAGAAGGTAATTGGAATGCTGTGCAAAAACATTCCGGACTATCTAGATGTGGAAAAAGTTGTCGTTTGAGATGGGCAAATCATCTTCGACCGAGCCTTAAGAAAGGTCCGTTTAGTCCAGAAGAAGAGCAGAGAATTATTGAACTACATGCCCAGATGGGTAACAAATGGGCTCGAATGGCTGTATTTTTACCTGGTCGTACAGACAATGAAATCAAGAATTACTGGAATACCCGAATGAAGAGGCGGGAGCGTGCTGGATTACCACTATACCCTCCTAATATTTCAGTATCTGATGAAGCTCTGATGGATAATAATTTCATTGATTACAGCAGTGACGATATGATGCAAATTGACAGTTTTGCAACCCCTGACTACACCTCTGGCTACAATTTACTTTGTGTACCAGAAAGTTCTGCAAGTAGCAGGTGTTTTCAAGGTTTAAGGTCTCAAAGGAACAATGGATTTATAGGTCAATCGATAAACCAGATACCATTCCTAGGAACACCATACCCAACAGTGGTTCATTCCACCATAGGCAATGTATTTCCTATGTTTGATAGTTTCTTGAAAAACGAAACTGACTATGAGTCAAACTACGCTTACGAGTATAATAATCAGTTTATAAATCCAGGAAGCCATGCCCTGATAGCAAACGGTAACAATACTATTTCTAGCTCCGAGCCTGTGCCTGTAAGGCTAGTGCTCCCTTCAATCCAATATGGATGCAATAACGATACTGACCTAAGCTGGGAAGAATACATTCAGTCTCCTTTAGCTGCTACAATAGAGTCTGAAAGTTCTTCCCTTAAGTACACCGGTCTTCTAGATGACGTAGTTCGCGAGTACAGAGCTCGTTATGGGAAGAAATCCTCTACTGATAAGAGCTTGAATTCCCCTTTGTTTACCAACTGCGATCCTCTCGATAATTATGGAAATAACTACTTTTACGAGGATGAATTTGACACAGTTTCTCCTTTTGATGGCTATAATGCATCTGTATTCTACGAGTTCTCTCCTCCGCTTAGTGGCAGTTCCGGTAATCTCTCATCATTCTTTTGTTAG

Protein

Gene

>AfisC8G01729
GAGGGGGAGACATTAGAAGGAAATAGAAGGTGATCGTATCCGCCCACAGTACGGGCCGATGCTTTCTCTCTCTCTCTCTCTCTCTTCCTAGTAAAAATAAACAAAGAAATGTTCGATTCGAGCTGAAAAACTTCGGTAATAAACTCTTTTTTCTAACATATTAACTACTATATTTGATTTATGAAGTTTGTTTCCTAATTCTGCAGACCTCATTTTTTTTCAAGCTCCTTTTCAGTTATAGCTATTTTCTTACTATTTAAGAAATTGCCTATTTTATCTTCCTTGTTAATTTTTATAATCAACTATTGTTTTTTTAAAATTATGATTAAATTACAGACGAGTAGAAATGTAATTGGATATTTGGATCCTGTCCAGCTCTTTCTTCTGCATTGAGGTAATATATTTTCTACGGCGTAATTGTTAAAATTGAGTGAAATTAAGTTGCCAGTTAATTCTTTAGTGCATATAATTAAAGTAATTTGTTTTTTAGTAATGGTTTTATTGATGAGTTCGTATTAGTTTTGTCTGTTTCGGTTTAACTTATCCTATATTTCCAAGTTAAGACTTTAAGAGTTCTACCGTTTCAATAGTTTTTTAGTAAGTGGGAAAGGTATTGGGAAGAAGATTCATAACTAAATTAGATCTTGTGCTTTTTGATCTGCATAGAGAGGTATTGTTATTGAAAGATTTCTTTTCCCCTTTCTTTTTCTTTTTTCTTTTGCTTTTCAATAACGATATCAGTTAAGTAGTTCTGGTTTTCAGTTATATTGTTGTCTAAAACCTAAATCAAATGAAATTTTGAATTTTCTTCTTTAACTACATGATCGTAACGAGTGTGTAGACGAATTACGGTTTTATAGTTTAAATCTTACTTTGCTGAATTCTATTTTACTAATAAAGGCATGGTTATTGATTCTAGGAAATTCAATCAAATGCTCTTCATCTTTATTACAATCCTAAGTATTTAAATTAAACTATCAAATGATTTGTTGTATGTATTCTGTCCTTTATAATAATCTAAAGTTAATTTGTCGTTTACGAAATCGTCGTTTTAATTTAATGCAACTAGAAAATAGATTATTGCATAGCAATTTGATTGGATTAGATACATTGGCTTTCTAGTTAATTTTTGCATGGTCTGGACTTGATTTTTTTATTTATAATTTGATGCGTTCATGTGCTTTCCAATAGGTTATTTTGGTTGCATGAACTCTTGCATGTTTGATTTATTGCATTTCATATATTCATAGTAGATTAACTTATATGTGTTTGTTTCTTTATTTGAAAAAAAAATGGTTATAATACATGCCTGAGGGATACAAACCCATAACTTTTGACTTCATGTTCTAAGTCTTTACCATAAACTGAAATTATCTGACTGCTTTTGTTTTGTAAAACCGGTTTGTCTTGAACAATTTGAGTAATAATTTAATGTAGAAAATTCCCAAAACTTTGACAATTTCGACAGGTTAATTATTAATTTAATAAAAATCGTCAAAGACTTCTAACTTATAAGCAATATGTGTGTTACCCCAAAATCACTCAGTTATCAATCAGATATTTTTTCCCTTTCAATGTGAATAAGTTTGATTGCATGCTGAATTTTTAACTCAAATAGTGATACATGCAATAATGGAACTAAACATTTCGTTAACCTGTAAGTGTTATTGTTGCATCAGGTTTAAGGTTATGGGTCGCACCAGAAAAGAAAACTATACTGATAAGTATTTGGTGGACGGTCAAGAAGAAAATGATGATGGTAGCTCAGGCACATCGATAGCAGATGGCGTAGTTTCAAGTTTAAAAAAGGGGCCCTGGACAGCTGCAGAAGATGCAGTTTTAGTTGAATATGTAAAGAAGAATGGAGAAGGTAATTGGAATGCTGTGCAAAAACATTCCGGACTATCTAGATGTGGAAAAAGTTGTCGTTTGAGATGGGCAAATCATCTTCGACCGAGCCTTAAGAAAGGTCCGTTTAGTCCAGAAGAAGAGCAGAGAATTATTGAACTACATGCCCAGATGGGTAACAAATGGGCTCGAATGGCTGTATTTGTAAGTCATTTTCACCTCTTGTGTTCAAGCACTATTAATTACTTACTGTTCAGATAATTTTCATGTCACTGGGTAGTATTGGATTTTAAAAAAGAAATTCAAGATGTGTACTTGTACTATCGTAGCTGTTTTGTTTCTTAGCTTCCAGTAGTTGATTATCTTGTTCTAAGTAATTCATTCGGCCCTGTAATTTGACGTGAAATGTGAACAAAGGGAACAGTGTCAGGTTGTTTGTTATCAATGATTCACAATCATAAACTCCTCAGATTTCAAATTGGCCCATAGCGAACACATATTTTGTTCATTAGCTATATTATAACATGTTCAAAAGACTAAGGTAGCACATTGTTTTTAAGGGTTTTTGACACAGCTCTTATGTTTAATGGGATCTTTGTAAGTTACAATGTTTGTCTTATTAAATTTAGTCTTTAATATCTTGAAATTTATCTCAAAATCTATCAAAGGTAAACCAAATTTGTCAAAATTTTCGTCGCAAATGTCAAGGAAAAATGAAGTAAACCTAATGAATAAACAGCAAAGTTCGAGTCTAGAAGCCTAAGAAAACATATTAGTTATGGCATGCTATTTGTTGACATATTTTATTACAGTTTCAATTTATTTTGTTCTTGATTGGTTAGTAAGATTAAAGGCAGTCCTCTTTCACTTATCCTAATTGTTTTCTTTAACATTTTGGTTATTATGGGTAGTTACACAAACCGAAACATGATTATTCGTTTTGCCTGGCATTGTAGTTTGAAACTTTGAATCCATTGGTTTGTCTTTTTGTTTGTTCAAATTGGCACAAATTGAAAAATAACGGGGTGGTGCACAACCGATTAGTGCAATCAATAATTCTAGTTTGCCCGGCAATCAATTCGTGGATTGATAAGGGAAAAATTGCAACCCATCAATTTCTGCAGCACCCGTAACTTTTACCTTTGATTTTGAGATCTGCATATTCTTACTTAGTTTCTGTCCTTGTAGCATTGCTCTTAGTGCAGTCAGTTCCTCTATCCCTTATTTGTTTTTGTCAAAAGGCATAATTTTTCATTCTAGATCAATATCAATTTACAACAGGTATACCACTCTGTTTCTTTTATCATCCTAGTTGTTTTTGTTGCCTATATTATATTGTAAATGTGTAGATCGCAAAATATCTACAGCTGCATCATTATCTGCCGTTTGACTAGTTCAAGTACTAAAAAGTTCTTTGATTGCAGGGTAAATGAATTTGATTCAATTGAGCTGCATTATTTCATCTGTTGTTTGGATAACTTTCTCTCTTTATTTCCCTATAAAAGTCCTAATTCATATGCTTTATGTTATGTGGTTGTCGTACATACAGAACTGGTTTTATACAAAATAAAATTAAAGTATGAAGTATATGGATTGAAAGAATCAAATGTTAACCATGCTTTTGATTAGATTCAGGATGTTAGATTAGTTTTTATATATATCAAACTGGGCATAGTAGTTCCTGAAGGTATCGTACCTTCATCCTATATACCACTCTGCACTAATAATTCACATCACTCTATATCACAGTTACCTGGTCGTACAGACAATGAAATCAAGAATTACTGGAATACCCGAATGAAGAGGCGGGAGCGTGCTGGATTACCACTATACCCTCCTAATATTTCAGTATCTGATGAAGCTCTGATGGATAATAATTTCATTGATTACAGCAGTGACGATATGATGCAAATTGACAGTTTTGCAACCCCTGACTACACCTCTGGCTACAATTTACTTTGTGTACCAGAAAGTTCTGCAAGTAGCAGGTGTTTTCAAGGTTTAAGGTCTCAAAGGAACAATGGATTTATAGGTCAATCGATAAACCAGATACCATTCCTAGGAACACCATACCCAACAGTGGTTCATTCCACCATAGGCAATGTATTTCCTATGTTTGATAGTTTCTTGAAAAACGAAACTGACTATGAGTCAAACTACGCTTACGAGTATAATAATCAGTTTATAAATCCAGGAAGCCATGCCCTGATAGCAAACGGTAACAATACTATTTCTAGCTCCGAGCCTGTGCCTGTAAGGCTAGTGCTCCCTTCAATCCAATATGGATGCAATAACGATACTGACCTAAGCTGGGAAGAATACATTCAGTCTCCTTTAGCTGCTACAATAGAGTCTGAAAGTTCTTCCCTTAAGTACACCGGTCTTCTAGATGACGTAGTTCGCGAGTACAGAGCTCGTTATGGGAAGAAATCCTCTACTGATAAGAGCTTGAATTCCCCTTTGTTTACCAACTGCGATCCTCTCGATAATTATGGAAATAACTACTTTTACGAGGATGAATTTGACACAGTTTCTCCTTTTGATGGCTATAATGCATCTGTATTCTACGAGTTCTCTCCTCCGCTTAGTGGCAGTTCCGGTAATCTCTCATCATTCTTTTGTTAGAAAATCAACGTCCTTCAGAGTTTCTATAAGTTTCATGCATATTCATTTTCATTTATGTGAAAATTTAAGCTTATATACATGTTGAAACACAAATTAGTGGTTCTTGGAAGCTATTATCTTTGCTGGATTTTATTTACAGCATATTATGTGATTGCAGATTTAGGCAGGATGGAGAAAAACATGAAAGAGAAACCAGAAAATTTGAGGTCAGATGCCTTGTTAGATTCTGCTTGTGGCTCCAAATTCTCAAAAGAGCATGTTGAACTAAACAGTGCTGTAGAAGCTATCATAGGTAGGACTGAGAACAAGGAAAAGCCATTGCTGTCGGAGTCTCCTCAACACTCAGCGGTGATATGATGCTGCTTTCTTCTTTTTATTGCAATAACATGCTTTAAGTTGAGCCCTCCAAATATTTGAAATTATCAAAGTACTTTTTTGAGTTATCTGAATTTTTAGCCTCTGAGATGAATGAGTTGTCCGCTGAATATTGATGCTTAGTTTTGATCAATTTGGTTACAGTTTTTGAATAAATCTTGGAACTTATATTTGAATAAACTTGCTGAGCCTTTGATAGATCCAGTTTGCTATGTTCTTATACTTTACCTTCGTTTTTGTTTAATCAGGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253654.1	3.3e-81	transcription factor GAMYB-like
Swissprot	A2WW87.1	1.6e-64	OsGAMyb
trEMBL	A0A5P1FM11	2.3e-81	Transcription factor GAMYB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G11440.1	39.28	6e-62	234	ATMYB65;MYB65	myb domain protein 65

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01729	AT3G11440.1	443	189	19	33	411	36	462	39.28	6e-62	234
AfisC8G01729	AT5G06100.1	140	34	2	21	160	17	152	72.86	9e-58	221
AfisC8G01729	AT5G06100.3	140	34	2	21	160	17	152	72.86	1e-57	220

Ortholog group

Species	Genes
Allium cepa	g22465.t1
Allium fistulosum	AfisC8G01729
Allium sativum	Asa1G03444.1; Asa6G04549.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	43	103	55.5	4.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0002213	P	defense response to insect
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009759	P	indole glucosinolate biosynthetic process
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009860	P	pollen tube growth
GO:0009909	P	regulation of flower development
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010438	P	cellular response to sulfur starvation
GO:0044212	F	transcription regulatory region DNA binding
GO:0016301	F	kinase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045926	P	negative regulation of growth
GO:0048235	P	pollen sperm cell differentiation
GO:0080091	P	regulation of raffinose metabolic process
GO:0090406	C	pollen tube
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network