result

Gene information

Detail information of AfisC8G01770

Location

Gene	Chr	Start	End	Strand
AfisC8G01770	chr8	360199247	360200323	+

Sequences

CDS

Protein

Gene

>AfisC8G01770
ATGGAAGATGCTGGCTTAAAGAAAGGGCCTTGGACAGCTGAAGAAGATGTTCTTTTACTTTCCTACATTCAAAAATACGGGCCGCGTAATTGGAGATTAGTTCCAGCTAACACTGGTACATATTTTGCTTAACTTTGCAACTGCTTAATTATTCATGCTCTTGTCTATATACTATATATAAAAATTAATGTATGCATGCAGGATTGCTAAGATGCAGCAAAAGTTGTAGATTAAGATGGACAAATTATCTCAGGCCTGGAATAAAGAGAGGCAATTTCACTCCTGATGAAGAAAATTTGATTATACATCTTCAATCTATGCTTGGGAACAGGTATCTATAAATAAACCCACATTTCTCCTAATATGCATGTAAAACAGCTGTAAACATAACTGATTGTGATTTTCTAACCTGTTGTTATGCCAGAAGAAAACGACAATTTCTAAACATGTAATGTAAATCTTGTGTAGGTGGGCAGCAATAGCTTCATATTTGCCACAAAGAACAGATAACGACATAAAGAATTACTGGAACACTCGACTCAAGAAAAGGATCAGCAATAATCAGACAGCCAACTGTTGCAGTCAAGAAAAAGAGCCACTGTTTCAAGAAGCAAACAATCTTAATCTGGAAAATCAAAGAAACTACCATGACTGTTCTTCTACGACGTATGTCTCGAATACGGAAAACATCTCCAGGCTGTTAAAAGACTGGATGGGTCCGACTGGTACAGATTCTACGGTTAGTGTTGCAAGTAGCAGCAATGCTGTTACCTTATATAATGAGCACCAAGAAAATATGGAGCTTTGTAATGATATGGACAGCATGCAAGAGCCCACTGATCCAGTAATTGCTTTTGAGAATAATATGGAATGCGAAGAGTGGAACTGTCTTCCATACGAGAGTTGGCCTGTTGACGAGGAGCAGTGGCAATGGTAACTTGAAAGAAAGGTGAAAAATGAAGAAGATTTTTATCACGAAATTGGGAGATTATATGTATTGGTGTTTATGCGGGTACATACAATAGAGGGTATACTCAACAGTTAGAGCGTTGATGAATATACTAGATATTAATGCAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253779.1	4.1e-60	myb-related protein 306-like
Swissprot	Q8GYP5.1	1.4e-57	Myb domain protein 60
trEMBL	A0A5P1FIA7	2.9e-60	Myb-related protein 306-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08810.1	62.57	8e-58	220	AtMYB60;MYB60	myb domain protein 60

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01770	AT1G08810.1	171	56	2	5	175	11	173	62.57	8e-58	220
AfisC8G01770	AT1G74650.1	214	50	3	2	163	8	218	50.93	4e-52	201
AfisC8G01770	AT3G28910.1	109	24	0	2	110	8	116	77.98	6e-51	197

Ortholog group

Species	Genes
Allium cepa	g328073.t1
Allium fistulosum	AfisC8G01770
Allium sativum	Asa1G03387.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	8	55	57.4	1e-15
PF00249.28	Myb_DNA-binding	Domain	61	104	55.3	4.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001666	P	response to hypoxia
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009617	P	response to bacterium
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0048658	P	anther wall tapetum development
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:0090406	C	pollen tube

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network