result

Gene information

Detail information of AfisC8G01924

Location

Gene	Chr	Start	End	Strand
AfisC8G01924	chr8	385602607	385603646	-

Sequences

CDS

Protein

Gene

>AfisC8G01924
ATGAAATGTCTTCACGCACATATTAACCCTCACGGCAATGAGTATTGCGATCTACCTAGAAGAGTTCTTCAATCCCTTTCAACTGCTCTTGATCTTCTTGTGCAGCAACAAACAAAGCTCCAGTCATGTTCTCTAACCCAAAGCGTTAATAACAGCAGTTTGAGTTTGAAGAGAGAGAAACAAAGTAGGGAGAAGGCTCCAAATAAGAAAAGGTAAATATAATTATATCATATTACAATATAACCTGTTTTTCTATTACTGTAGGTTTTAATCCATGAGATACCAAGTAATTAACATGGTTATATGCTTTTATATCAGGAAAACAGAAGATTCAAAGTCGATACATATAACAATGGCGCCACATTATGATGGTTATAGATGGAGAAAATACGGAGAGAAGACAATTCAAAATTCTGCTTATCCAAGGTATAAGCTACTTACTAATTCAACTCGTCTAACACACATGAAATTTATTTACTACTCTGCAAACTTTGTAACCATGTACGAAAAACAAATCTTTTACTACTAAGGAATGGCCTTTTGGCATCCGTATGATTGTTATTGTTCAAGATGGAAATTCTGGTGAACTTGACAGACTGGCGAACGTGACCGATTAGTTAACATACCCTTATTTGAACTCTTGACCTCTCAATTATCAAACTAGACTAGGACTCCGCGGCTTGTTAATTGATTAATTGCTACATCTTGATAAATAAATTATATGTATATAAAACATAAAGGAATTTTTACAACTCAACTAATGTAAGTTGAACATTTGTTTTGAATAGGACATACTACAGATGCACGCATAAAAATGAAGGGTGCCTTGCAACGAAAAAGATACAGCAACAAGATGACGATAAGTACAACTATGAGTCTCCCATGTTTCAAGTTATCTATGAAAACAAACACTCTTGCAGTTCTTCCAGAACAAGCAATGACGAATATGTGTTTTGCCACCATGATCAATCCAGTTTCACTGTATCAGAGGCTAAGAAATCTTGCTCTTTTCACAGTGTTACTATGGACAATATCATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010922758.1	1.2e-12	probable WRKY transcription factor 70
Swissprot	Q93WU8.2	2.1e-11	WRKY DNA-binding protein 54
trEMBL	A0A835UE11	8.9e-15	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40750.1	54.84	2e-13	71.2	ATWRKY54;WRKY54	WRKY DNA-binding protein 54

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01924	AT2G40750.1	62	22	2	88	148	153	209	54.84	2e-13	71.2
AfisC8G01924	AT5G49520.1	60	25	2	88	147	222	275	48.33	3e-11	63.9
AfisC8G01924	AT3G56400.1	128	78	3	22	148	56	177	33.59	4e-11	63.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	88	148	65.4	4.1e-18

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0030010	P	establishment of cell polarity
GO:0008219	P	cell death
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009737	P	response to abscisic acid
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009846	P	pollen germination
GO:0009942	P	longitudinal axis specification
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1990837	F	sequence-specific double-stranded DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network