result

Gene information

Detail information of AfisC8G01934

Location

Gene	Chr	Start	End	Strand
AfisC8G01934	chr8	387003524	387005180	-

Sequences

CDS

Protein

Gene

>AfisC8G01934
AGTAGTTTACACCTAACAGTACCTGTCCATTATTACATAAATATTTGTTTTTAATTGACGTTGTACCGATCAATCATTTAACCATATAAAATCCACAGGCAGCACTAGTACCAAACCTCAATTAACAGCAGAACGCAAAATATAACCAAAAATATGGAGCAAAACAAATTAATGTTGTCTGAATCAGGAAATAAGTACGCGATTGAAGAGATAAAGAGGGGAGAAGACCTAATGAAATGTCTACATACACATCTTAATCCACGTAGCGATGAATATAGTGATTTATCTGCAAAGATACTTCAATCCCTTTCAGCTGCTCGTCTTCTTCTCATGTCGCAGGAAGCTGACCCAAGTTCTGCAATCCAAAGCACTAACAATGGCAGTTCGAGTTTGAAGAGAGAGAAACAAACCAAGGAGAAGGTTCCAAATAAGAGAAGGTAAATATAATCATATCATGTTCATATAACTGCCTTTTCTATTATTGTATGTTTTAATAGGCTAGATATATGTGATTGTCAATCATCAACATCGGTATATATATTTTTTGTAACAGGAAACATGAGGATTCATCAAAATCAATATGTATGACAATGGCACCACATTATGATGGTTATAAATGGAGAAAATATGGGGAGAAAAGAATTCAAAATTCTGCTTATCCAAGGTTAGCTACTCACCAATTCAAATCATCATAAACTTTGGTTCATCCGGCATATATAAATTTAACAAAAGCACTTTGTGAATTTGGCAACATGCCAGGAAACAACTCTTACATAGTAGAAAAGACCTTTTGACAATATGCTGATGAATTGTTATTCATCAAGACCGATAAACACAGATTAATTAGTTTATGGTGATTCAAAATCTTGTTTATTTTGAACAGAACGTATTATAGATGCACACATAAAGATGAAGGGTGCCTCGCAACAAAAAAGGTACAGCAACAAGAGGGTGATAAGTACAGCAATGACCCTCCGATGTTTCGAGTTATCTATGAAAACAAACATTCTTGCAGTTCTTCCAGCATAAATAACGATGAATATGTGTTTTATCATCATGATGATCAATCTAGTTTCACAGCTTCGGAGGGCAAAAAATCTTCCCCTTTTTGCAACGTTAGCATTGACAGTATTATTCACAGTGAACAAGTTGAACATAATTCTCCTCAATCTGATATTGATCAGAAGTTGTTTAATGAACTGAGTAGTTCGCTGAAGATTGAAAAGGATAACGTGAATTGTGGTTCTGCAATGGAGGCCAACAATTTTCACATGAACCCTACTTGGATTCCATATCACCAATATGAACCGGATTATAATTATGATTTGGAGAGTCTCCTCAGCTCATTCATCTAGCTTTTTATTTATTTCTAATCTAGCCCCACATGTATTGTTGGCAGTAATTAGTTATGTGAATAGTGTAATTTAGTAATAATCAAACGGAGGTTGTACGTTGAAATATGTGATAAAATGTATCAAATAGAAGGAACGTAAGCATCGCAATGAAGAAAACAGTTTATCAAATCAAAGTTATGGTTTAGAATTATTGTCAAAATCATATAACTCTAGAATGATGTTTCAAACAAAATATGTTTTTGGTTTTGTTTTTTATTTCATTTATTATTATACTATAGGACAAATTTTTAGTATAGACCCGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241688.1	5.5e-19	probable WRKY transcription factor 46
Swissprot	Q8GWF1.1	1.0e-09	WRKY DNA-binding protein 38
trEMBL	A0A8J5S6B6	9.8e-18	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66550.2	33.52	4e-17	85.5	ATWRKY67;WRKY67	WRKY DNA-binding protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01934	AT1G66550.2	176	99	5	16	185	9	172	33.52	4e-17	85.5
AfisC8G01934	AT3G56400.1	205	114	6	16	204	11	206	32.20	1e-16	84.0
AfisC8G01934	AT1G66550.1	182	96	8	16	185	9	177	33.52	4e-16	82.0

Ortholog group

Species	Genes
Allium cepa	g256447.t1
Allium fistulosum	AfisC8G01934
Allium sativum	Asa1G03267.1; Asa1G03269.1; Asa1G03460.1; Asa8G00134.1; Asa8G00484.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	113	175	81.0	5.2e-23

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0008219	P	cell death
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009737	P	response to abscisic acid
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009846	P	pollen germination
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1990837	F	sequence-specific double-stranded DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network