result

Gene information

Detail information of AfisC8G01948

Location

Gene	Chr	Start	End	Strand
AfisC8G01948	chr8	388950635	388952294	-

Sequences

CDS

Protein

Gene

>AfisC8G01948
ATGAGAAAGTTCCCCAAGCACTACAAGTTAATATACAAAATCCCTCACTACTGAATTAAAAAAAAGGCAAAAATAGATAAGTGCTCCTTTTGCGAATTAGAAATTTAATACATGCCGAAATTCAAATAGTATTGAAATATGCACTGAGAAGAAGATGCACATAAAGATCGGTAATTATAAGAAAGAAACAATTGTTCTCTTAAGCACTGCTTCTTTTCTACAACTGATAGGGAAGAAATCTACCTGAATCTCGTTCTTGAATTTGTGCCCGAGACTGTCAATCGTGTTGCTAGGCAGTATAGCAAGATGAGCCAACATATGCCCCTCATATTTGTTAAACTATATACCTATCAGGTATGCCTTATTCATTTTAACATCATATAAAACATAGAAAATAATGTTCACAGAAATTATAGCACATTTAATTATGTATATTCTAGCAAATGTAGTGTTGTGACTAAGTGAATTGAATGCTGAGTTTTCATGTCTACATTGGTGTAGATGAATGTATATTTTAACAAAACCATTGTATTAGATATGCAGATCTCTTGCTTACATTCACAACTGCGTAGGCATTTTCCATCGAGACATTAAACCTCAAAATTTGCTGGTGAGTTTAGTTTATAAACAATCCCATGGTGGTTCTCATTTCTGTGTATATGTATTTTTGCATTTATTTTTTTGAAGTTTCCTGAGTTACAAAAAGTCCTTTCATTCTGCCTGATTATCATATGTGCATTATTATTATTATTATTATTTAAAGTGCCTTGGAAAAAAGATTATAACAAATTGTGGTACATACTGTGTTTAAGTGGTGTATTTAGGTTTAATATTGATGAATTGCTTTGGCACTTATGTAGCCAAGTTCTCCACAAAAGAATTTTTTTTTCAGATGCTATTTCTAAAATCTCCATGGTATTATTAGAATTTTATGACTGATTAGCTAGCAATAAAAATTGCAATTACACAACATAATCTTACGGTGCTAGCTGATGCAGCGTGAAGTAGAAAAGGAATATAATCGTAAACCACAAAGAAAAAGAAAGTTAAAAATTTAGAATCCATCAGAAATAATCATAATAATTTCTTGGTGTGAATTATTTCTCTTGTTGGTTTGTAATATGCTTTACCTGTTTCAGGTAAATCCACATATTCATCAGCTTAAATTGTGTGATTTTGGTAGTGCAAAAGTTCTGGTAAGTCTTCACCGGCCTTAAGCATATGTATAAAACCATTGAACTAAGTATGAATTGCTATGATATTTGTTACATTGTTCAGGTGAAAGGAGAGCCAAACATCTCTTATATCTGCTCAAGATATTATCGTGCTCCGGAACTCATAAATTCGTAGATATTCATCTTTCCTGTAAATGTTATTCAGTTGCTGAAGCTTATGTACCATGTACCACCAACTGCCGGTTATCATCAGAGCGTGTGGAACAAGATAGGTCGAATATGCCCTTTTCTTGAATTCTGCTACTTCAGCAACTCAGAGATGGTGCTTCAGATGAAAGCAATAAAATTTTGCAGATGCTCACTATTCCTTGTTTGTAGGGGGTTACATAAGCTCTTGTAAAATATTAAAAAGATGGTTTATTCTTGACCTTATTCTTTTAATGGTTGGACATTTGTGACGACCTTTTATAACCTTATTATGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	PIN14400.1	3.8e-51	Glycogen synthase kinase-3
Swissprot	P51138.1	4.3e-52	Glycogen synthase kinase-3 homolog MsK-2
trEMBL	A0A6I9UDQ8	2.7e-51	non-specific serine/threonine protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G57870.1	86.79	4e-52	199	ATSK42;SK42	shaggy-like kinase 42

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01948	AT1G57870.2	106	14	10	115	149	254	86.79	4e-52	199
AfisC8G01948	AT1G57870.1	106	14	10	115	149	254	86.79	4e-52	199
AfisC8G01948	AT1G57870.3	106	14	10	115	149	254	86.79	6e-52	198

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	7	116	89.4	2.1e-25

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0002119	P	nematode larval development
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004842	F	ubiquitin-protein transferase activity
GO:0005524	F	ATP binding
GO:0016567	P	protein ubiquitination
GO:0005634	C	nucleus
GO:0006898	P	receptor-mediated endocytosis
GO:0007052	P	mitotic spindle organization
GO:0007281	P	germ cell development
GO:0007399	P	nervous system development
GO:0009507	C	chloroplast
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009792	P	embryo development ending in birth or egg hatching
GO:0009933	P	meristem structural organization
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0030178	P	negative regulation of Wnt signaling pathway
GO:0032436	P	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880	P	regulation of protein localization
GO:0035188	P	hatching
GO:0040010	P	positive regulation of growth rate
GO:0040011	P	locomotion
GO:0042538	P	hyperosmotic salinity response
GO:0043652	P	engulfment of apoptotic cell
GO:0046777	P	protein autophosphorylation
GO:0048511	P	rhythmic process
GO:0050321	F	tau-protein kinase activity
GO:0060069	P	Wnt signaling pathway, regulating spindle positioning
GO:0060070	P	canonical Wnt signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network