result

Gene information

Detail information of AfisC8G02007

Location

Gene	Chr	Start	End	Strand
AfisC8G02007	chr8	400271300	400273979	+

Sequences

CDS

>AfisC8G02007
ATGACTTCTTCTTCAGGTAGCTTAGAAACATCGGTAAACTCCCTTGATTTTATGAGTTCCAATCAAATGGATGCAAGTTACTCTAACTTCACCTCTATAGCTCCATCTTCGCTCTTATTTTCACCTCCTCCAGTTTCTCCTTCTTCATTCTTTGCAAATGTTCCCAACGGTTTTAATTCCAGTGAGCTTTTGGATTCTCCATCCCTTTTATCTCCTTCTAATATTTTGCAATCTTCAACGACTGAGAATATGTCTTCACAAGCACTGGAGTGGATGAGCAATTCCTATCAACAAGGAATCAAGAAAGAAGAAAGAAGTTTCACCGACTTTTCTTTCCAACAACCACAAACAAATGCAATGGTTGGAAACAATATGCATCCATCTCACTTTCAACCTTCTACCACATCAATCTATTCGGATAATGCTTCGATGAAAGAACAACAATGGAATGCTCAGTTCACTTCCAATACTGGAGTACAGATTAAGCCTGATCAATACGACGTTCCACTTCAGACAATTCCACTTCAACCAAACCCAATACATAGGGAAAGTAGGAAATCAGATGATGGCTATAACTGGAGAAAATATGGGCAAAAACAAGTAAAAGGGACCGAACATCCTCGAAGCTACTACAAATGCACATTCGTAAACTGCACTACTAAGAAAATAGTTGAGAGGTCGCTGGATGGTCAGATTACTGAAATTGTCTATAAAGGAACTCATCATCATCCAAAGCCTCAGTCCACTAGAAGGAACTCTTCATCTTCCTCGTATTCTTCACAATTTGATCATGCATTGCCTGTTGAGCAGAACGCTTTGAGTACTGATAATTCTTCGGCTTCTTTTGGTGATTACAATGGAGAATATGAAGACAACGATGAGAAAAGATGCAAAGAGAAGGAACATGGTGAAGGAACATCGGGTTCGGGTAACAGAACAGTAAGAGAGCCGAGAGTTGTTATTCAGACTACAAGCGACATTGATATACTTGATGATGGATATAGATGGAGAAAGTATGGGCAAAAAGTAGTGAAGGGCAATCCCAATCCAAGGAGCTATTTCAAATGCACAACAGCAGGGTGTCCAGTGAGAAAACACATAGAAAGGGCGCCACACGATTCCCGAGCAGTGATCACAACATACGAAGGAAAGCACATACATGACTTCCCTACTGCTCGTCGGTACAATGCCCAGAACACTGCAAATAGAACCTCCTTTACTTCTAATGAGACCAACAACTGCAACAACACTAATTTTACTATCTCTACAAGGCCTTCGACTGTTGCAAATCATCAAAGTCCTTACACACTAGAAATGTTTCAAGGCTCGGACAGCTATGGATTCATGATGAATCAGAATCAAAATCATCATCATCATCAACAACAACAACAACAACCACCACCACCATCTCAAAGAGATGATATATTCTTTGACTAG

Protein

Gene

>AfisC8G02007
CGACCTGTGTACATGCAAACGTATATAACAGCCACCGCCTCTGCTTATTCTCTTTCTTACATACAAACATCATTCTTCTTCTCCTCCTTTCGACTTAATTTTGATCCATGACTTCTTCTTCAGGTAGCTTAGAAACATCGGTAAACTCCCTTGATTTTATGAGTTCCAATCAAATGGATGCAAGTTACTCTAACTTCACCTCTATAGCTCCATCTTCGCTCTTATTTTCACCTCCTCCAGTTTCTCCTTCTTCATTCTTTGCAAATGTTCCCAACGGTTTTAATTCCAGTGAGCTTTTGGATTCTCCATCCCTTTTATCTCCTTCTAATGTAAGTATGTAATTTATTTAAGTAAGGAAATAACATTCTGAGCTGAAAAAAGGAATATTTGTATTGAACTCATGTATAAATAGTAAATACTAAATACTGCTAACAGCGACATGTATCATGAAAAGTTGTGTATTGATATACAAAACTTCATTTTCATGCTAGCTCATTATAGTTCTTCCTTTACAATTTTTTTGTAAATAAATAGATTTTGCAATCTTCAACGACTGAGAATATGTCTTCACAAGCACTGGAGTGGATGAGCAATTCCTATCAACAAGGAATCAAGAAAGAAGAAAGAAGTTTCACCGACTTTTCTTTCCAACAACCACAAACAAATGCAATGGTTGGAAACAATATGCATCCATCTCACTTTCAACCTTCTACCACATCAATCTATTCGGTATGTACAATCTTCTTTGACATTTTCAGCAATTTGCAGTTTGGTTTACCGGGATCTTCTATCATTCATATAATGTATTATGTATCAATCTTATTTCTATCTATATGTAGGATAATGCTTCGATGAAAGAACAACAATGGAATGCTCAGTTCACTTCCAATACTGGAGTACAGATTAAGCCTGATCAATACGACGTTCCACTTCAGACAATTCCACTTCAACCAAACCCAATACATAGGGAAAGTAGGAAATCAGATGATGGCTATAACTGGAGAAAATATGGGCAAAAACAAGTAAAAGGGACCGAACATCCTCGAAGCTACTACAAATGCACATTCGTAAACTGCACTACTAAGAAAATAGTTGAGAGGTCGCTGGATGGTCAGATTACTGAAATTGTCTATAAAGGAACTCATCATCATCCAAAGCCTCAGTCCACTAGAAGGAACTCTTCATCTTCCTCGTATTCTTCACAATTTGATCATGCATTGCCTGTTGAGCAGAACGCTTTGAGTACTGATAATTCTTCGGCTTCTTTTGGTGATTACAATGGAGAATATGAAGACAACGATGAGAAAAGATGGTACCATATTTATGTTTAACACGATTTTTAAACTTCAATTAAAATGTTGTTTTTTTACGCTAGAGTGTTCGCAAGTTTAAAATTAGTTAACCTGACTAAGTGTTATAATGTCAGCAAAGAGAAGGAACATGGTGAAGGAACATCGGGTTCGGGTAACAGAACAGTAAGAGAGCCGAGAGTTGTTATTCAGACTACAAGCGACATTGATATACTTGATGATGGATATAGATGGAGAAAGTATGGGCAAAAAGTAGTGAAGGGCAATCCCAATCCAAGGTGATTAACCTCTATCTATACACACACACATTGTTGATTATTCAGAAGTGTTCCATTTAGAGACATCAAAATATTTGGTTATAACTTATATGCTCTCTGGCTGTACTTAAATTTTTATTAATTCAAAGTTCCGTCGTTAAGTAATATTCAGCTGCCTATCAAGGCTAAATTACAGGATCACTTATAACTCATAAGCTTCTTGATTAACATTTGATATACTTCTGAGATCAACCAGGAAAAATTATTCCATTATTCAATATATAAACCTTGGGTGGTTCTGTCTTGAACGCACATCCCAACTCTACATAGTCACATTTCATTTTAGTTAGTGTTTTAACAAACGCAGGTACCATTTTGTGTCAATTGATACAAAATATGATGACTACCTTATCGTTGCTAATAACTTATTGGCTAACACACACAACCAAAATCTAATAGGAACCTTTTGCCCATCAAACTCGCTTTTTGAAACAAATTATAACTACTTCCAAAACTATTTATAAAACAGATTATAACTACTTCTATTTTTTCCAAATACTTCTCTCTCATATCAGTTTTTATAAGTGGTATAAAGGAGTAAAAGGTTCAGTCTAATATGACACTAAGAAGTAAAATGGTTTGTGGAACAGGAGCTATTTCAAATGCACAACAGCAGGGTGTCCAGTGAGAAAACACATAGAAAGGGCGCCACACGATTCCCGAGCAGTGATCACAACATACGAAGGAAAGCACATACATGACTTCCCTACTGCTCGTCGGTACAATGCCCAGAACACTGCAAATAGAACCTCCTTTACTTCTAATGAGACCAACAACTGCAACAACACTAATTTTACTATCTCTACAAGGCCTTCGACTGTTGCAAATCATCAAAGTCCTTACACACTAGAAATGTTTCAAGGCTCGGACAGCTATGGATTCATGATGAATCAGAATCAAAATCATCATCATCATCAACAACAACAACAACAACCACCACCACCATCTCAAAGAGATGATATATTCTTTGACTAGTGATTTTCAAAGTGGTTTAGGTTAATTAGTGAATCAAGATAACCAAAATAGTTTTAATTATACTTGTATATTTCAGTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008809977.1	6.6e-94	WRKY transcription factor WRKY24-like
Swissprot	Q6IEQ7.1	1.7e-86	WRKY transcription factor WRKY24
trEMBL	A0A8B7CZI2	2.1e-94	WRKY transcription factor WRKY24-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38470.1	42.14	4e-78	288	ATWRKY33;WRKY33	WRKY DNA-binding protein 33

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02007	AT2G38470.1	496	202	14	6	450	19	480	42.14	4e-78	288
AfisC8G02007	AT5G07100.1	345	111	7	51	394	28	297	45.80	3e-71	266
AfisC8G02007	AT4G26640.2	478	212	17	39	463	40	488	38.49	7e-69	258

Ortholog group

Species	Genes
Allium cepa	g418406.t1
Allium fistulosum	AfisC8G02007
Allium sativum	Asa1G03196.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	188	244	82.1	2.4e-23
PF03106.12	WRKY	Domain	331	387	85.7	1.8e-24

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001101	P	response to acid chemical
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009791	P	post-embryonic development
GO:0009846	P	pollen germination
GO:0010033	P	response to organic substance
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043167	F	ion binding
GO:0048608	P	reproductive structure development
GO:0070370	P	cellular heat acclimation
GO:1901141	P	regulation of lignin biosynthetic process
GO:1901700	P	response to oxygen-containing compound
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13424	WRKY33; WRKY transcription factor 33	EC:-	MAPK signaling pathway - plant	ko04016
K13424	WRKY33; WRKY transcription factor 33	EC:-	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network