result

Gene information

Detail information of AfisC8G02070

Location

Gene	Chr	Start	End	Strand
AfisC8G02070	chr8	408346621	408349131	-

Sequences

CDS

Protein

Gene

>AfisC8G02070
ATTTTATCTCTTGTCCTTCTCTTCAGTTATTTATTTATATTTATTTATATATCTAGGGACACTGGAATACAACTCCCGTCACTTCATTCTCTCCCTTTCATACTTTACTTTTTCTCGATCAACTACTTCCTATTTTCATAATTAATATTAAGTTATTGAATTTCTGTATTAGCATGATGGAGATCACAACTGTGGAACATCACCAGGTATGCATTCAGCTGTAATTTCTTGATTTTATAATTTCTAATCTATATGAATCTAATATCTATACTTTTAATTCTTGTTTTTCAGAGTTTAAATTGTGTGTACACACATCATACTGTGTATGTTATTGCGCCCTACTATGTTTGCAAATATAATTAGTTCATCCTTTTTGTATTTTGCAGCTCTTCATCATAAGTAGATAATCTGAATATGATTTTCTTTCCTTTCTTTCTCATATAGAAGTTAGCTTTTCCAGGTTTGTATTAGTTCGGCTTTTTGTGCACTCTTAACATAGTGAATATATAACTTTTCCTAAGTTATGGATCGAAATCTTTGTTATAAAGTTTATAAAATGTGAAAAAAGTTTAATTTCTATGATTTTCAAGTAACTATCCTCATATTACCCTAATTTGCAAATTCATTAATCCATATAGATTTTAAAAGGTTAATTTTTCGTCATGAATTTGATGTTTGTTGTTGTATAAAATCTAATCTAATCACAGTTCCCTTCAATTATTTCATCTACTTAAAGTTTTGTTTGAGTTCAAACACTAAAAAGAATGAAGAAAGAAGCGGCGGGGATTGTATCTAGCTAAGTAATCAATATACTTTGATCATATATAGTAACTAATTACTCTACAATTTGCCTGTCTAAATAAAATTAAAATTAACAAGCATTTTACAGTTTCAGGGTCTTACAATTCTGCAAATGTTGGTAGCTTTAACATTTAGACATTTGAGATTTATTAATTTGATTATCCCCTACATATCTGACTAAAGTACAGTTGCTTTATCTTCTTTCTTTTCTCTCATATGCATAGTAATCCAATATCGAAGATAGATGTTGGTCGTTGATAAAAGAAAAAAGTCTAAATTTTGAGAAAACACACTGAACGTAAATTAAAAAACATATATAATTGGTTCCATCACAGGCCATGGACACTCATGCATTGGAGGATGAATCTCTGATGTGCCCTAAATCGATGCAACTGATGTCAGAGAACAAGAAACCAAGGCCTGAACCAGAACAAGCTCCAAAATGCCCTAGATGCGACTCAACCAACACCAAATTTTGCTACTATAACAATTACAGTCTTTCTCAGCCTAGATACTTCTGCAAGGGTTGCAAAAGGTAACCTAATATATGCACTCTCTTTCCACTAATACTTCACCGTATTTGTAGTCCCTGATCATAAATGTTTGTAAAAGAGAGAGCTTTAGTGGTTGGCATCATAATATAGGTTACAGAATTCTTGATTTATGTAGAAATATCCTTCAAGGTTTGTTCTATGAATCTTCATTTCAACATGTTCATGAATGTCATTGAAACTCTAACTCTATTCTTTCTCTCTAGGTATTGGACGAAAGGAGGCTCCCTTAGGAATGTACCGGTAGGTGGTGGAAGTCGGAAAAACAACAAAAGGTCAACCCTGCCATCAAACTCGTCCTCTTCTCTATCAAAGAAATTGCAAGATCAACATATTGCATTAACAAACAACAATCCAAATCCATTTGCCAATCTCAATCTCCCTTCGCTTCAGTTACCACCTATCTCCTTCGATCCAAGCGACTTAACTCTAGCCTTTGCAAGCATCCATAACCATAACACTAGTACTATTGATCAAAACAACACCAATAACAATAGCACTTTCATGCTTGGAAATGCTACCAATACTCATACCAACAATGCAACCATGGGTTTTCTTGATATTCTAAGAAGTGGGAGTACATTTGTAGACCACAATGCTACTAATGGTTCATACGATCAAAGCATGTGTTATGGTAACTACGGTCGCAATGTCGATGAAGATGGTAATTCTATGATGTTCAATTTCGGTGGAGGGCTATTGAATAGTAGTACTACAAATGAAGGAGTGATCGCAACAAATGGTAATAATGCTAAAGAGATGATGGATGATGTCAATGTAAAAATGGAAGAAGAGAGCAAGGTCAGTTATGAATGGCCAAATATAAGTGATCATGGTGTTGATTCTGCTACAAGAGACTACTGGAGCAATGGTGTTAATGGTGGTACTTCTTGGCATGGACTTATTAATAGCTCTCTTATGTAACTTAACTCTGCCTTTATGTGTACTGGTATAGTTAAATATCTGCATGTTAGTTTTTTTACATTGCATAGTAGAGAAGCTTGAATTGCCGTTTGTGGTACAGTAGAAAATTCTAGCTTCTGTTCTAAGGTCGTTGTGTTAAATGCGTTTATTGTTTATTTTGGTGGGGGAAACAGTTTTTATTTTTATTTATATTTTTATTTTCATAGCTTGATGAACTTGTTTAACTTGTAACCGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008789033.1	4.6e-51	dof zinc finger protein DOF3.2-like isoform X1
Swissprot	O82155.1	1.9e-25	Dof zinc finger protein DOF1.7
trEMBL	A0A8B7C0E3	3.3e-51	dof zinc finger protein DOF3.2-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	80.00	9e-30	127		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02070	AT4G24060.1	65	13	0	36	100	43	107	80.00	9e-30	127
AfisC8G02070	AT2G28510.1	181	74	7	44	221	46	199	42.54	2e-28	123
AfisC8G02070	AT5G60200.1	67	11	2	37	103	47	111	80.60	2e-28	123

Ortholog group

Species	Genes
Allium cepa	g435587.t1; g435588.t1
Allium fistulosum	AfisC8G02070
Allium sativum	Asa1G03131.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	44	100	111.7	1.2e-32

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network