result

Gene information

Detail information of AfisC8G02113

Location

Gene	Chr	Start	End	Strand
AfisC8G02113	chr8	417942299	417943360	+

Sequences

CDS

Protein

Gene

>AfisC8G02113
ATGGGGAGAGGAAAGATTGAAATTAACAGGATTGAAAACACAACAAATTGCCAGGTTACTTTCTGCAAAAGGAGGAACGGATTAATGAAAAAAGCTTATGAACTTTCTGTGCTTTGTGATGCTGAAATTGCCTTAATTGTTTTTTCAAGTCGAGGCCGCCTCGATGAATACTCAAATTTGAACAGGTCAGTTTCTTAGTTATTCTTGATTTAGCTTAAGTTCTCCAATTGGTCTTATATATCTTTGATCCTTCATTACATCTCCTAGATCTAGCTTGTTGTATTCTACACCTCCTTTTCTTTCTTTCTTTTCTTGAATTTAGTTAAAAACTAACAAGACCAAGGTCGACAATTGCTATATTCTATGTTTTTTTGTGTATTTCCAGTAGTCTATATGTATGTTGTTTGAAACCAAATAACTAAAAGAACAAAAAGTTATGTGCAAATCATGTTTGTATCTTTTTATAAGATAGAAAAGTTTTTTTCCTCTTTATATTTTAGCTATCTTTGTTTTTCAGTCGACTTATGACAGGCTTCTTTTAGTGTATATTTTTCTTTTTAAATATGACTGATCGGTTCCATTTTTTTGTTTCTTAAATTAACTGTTTTACTTGATCCCAAATTCTTTGTTTATTTATTAATTTTGAAATTTATGCATGAAATTAATTATACACCAATTTTGGTTGAACTGTTTATAGTTTTAATTAAACATAGAAATGTAAGGTTTCATATATGATTAAAATGTATCAGATCCTTGCAAGTATATGATTAAAATTATATTAAGTGTAATATGCGTGAAATGGTTGCTACAACAGTACTGTGAGCATGAAGTTGCAAAATTACGCCATCAGATTCAAATTTTAACTAATGCTAACAAGTAAGCTTAATTATGGCTAATGATGAAAGCATTTCATCTCAGCAAATATTTTTATTTATATACTATTTATTATATTCAAAATATAGACACTTAATGGGTGACTTACTGAGTGCTTTAAGTCTCAAAGAACTCAAACAACTCGAGAACCGACTTGAAAGAGGCATTACTAGGATATGCTCGAAGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	KHN20547.1	6.2e-36	Agamous-like MADS-box protein AGL11
Swissprot	A0A217EJJ0.1	8.2e-33	VviAG3
trEMBL	A0A0B2QLC4	4.5e-36	Agamous-like MADS-box protein AGL11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G09960.3	54.23	2e-33	137	AGL11;STK	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02113	AT4G09960.3	142	18	1	1	95	27	168	54.23	2e-33	137
AfisC8G02113	AT4G09960.4	142	18	1	1	95	1	142	54.23	2e-33	136
AfisC8G02113	AT4G09960.2	142	18	1	1	95	1	142	54.23	3e-33	136

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	85.5	1.1e-24
PF01486.14	K-box	Family	54	95	37.1	2.5e-09

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0010214	P	seed coat development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048283	P	indeterminate inflorescence morphogenesis
GO:0048481	P	plant ovule development
GO:0080155	P	regulation of double fertilization forming a zygote and endosperm
GO:1903338	P	regulation of cell wall organization or biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network