result

Gene information

Detail information of AfisC8G02143

Location

Gene	Chr	Start	End	Strand
AfisC8G02143	chr8	425682408	425684153	+

Sequences

CDS

>AfisC8G02143
ATGGCTGCATCCATAGATATGTATAATAACAGCAATTCTTCCTTCTATTCTCTCAATCCGTTCAACGAAGAGCTTATGCAAGCACTTGAACCTTTTATTCACAGTGCTTCATCCTCTTCGGTTTCTTCGCCTAATTTCACTTTCGATACGTCTTCCGCGCCTATTTACAATCACCCATGTCTTCAAACTCAGTTCTTCGACGAATTTTCACCATCAAAATCGAATCTTTTTACCATGAACAATCAATCCCCAATCGGTTTAACTCAACTGAGCCCTATTCAGATCCAACAAATTCAAGCTCAAATCCAGTTAAACCAGCAGCACCAGCTCATGATTTCTCGTAGTTTACAAGCAAAAAACAACCAAAACCACACCTTTAACGCAAGATCTCAACCCATGAAACTATCAAGTGCCGCCAGTAGTGCAAAGCCTACAAAATTATACAGAGGCGTAAGGCAACGACACTGGGGTAAATGGGTTGCAGAAATCCGTCTACCAAAGAACAGAACTAGGCTTTGGTTGGGTACTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTACGACAGAGCTGCTTACAAGCTCCGAGGCGACTATGCCCGATTGAACTTTCCTGATCTAAAACAAAGCGGCGTTCACCTGCTTGAAAACAGCTTGTTGCATTCTACAGTCGACGCCAAACTCGAAGCTATTTGTAAGAGTTTGGAAGAGGGTTCTAATGGCGTCAAGGTCAATAAGAAAGAGAAGAAATGCAGCAAGGTTGAACAAGAAGTAAAGGTCGTTGAGGCCGTTAGTGACGAGTCAAGTTTGAACATGTTCTCGAATTCGCCTAGTTTGGATTCGAGCAGTAATTTGTTCTCGAGTTCGTCTTCGAATTCGAGCAACGTGAGTTCGCCTTGTCTGGACATTGATAGCTTGGATTTCACAGAGAAGCCATGGGATGAAAGTGAAGCGTTCTTGTTGACGAAATATCCATCTTATGAGATTGATTGGGATGCTTTGTTGGCTTAG

Protein

Gene

>AfisC8G02143
CAAAAGTTTTCCTCTTTCTTCGGTGAGCCCCCTTGAGTGTTCCACTAATTTCTTCTCAATCCTTTTTCCTTCCAAATCGCCCCTCAATCCTCTTTCTCTAGTTTTCTGCTCTCGAAAAGCTCTCAAAACTTTCAGAAGATCATTTTTTTCTTCTGGGTTTTTCGTTTCCAGCTTAAAGGGTTCATTTTATTACAACCCATCAAGCTATTTTTCTTTTTTTTTTCCCTGTTCTTTTACTAGATCTAAAAGAGGCTACTTTTTTTTAGGTGCCCTTGGAAATCTCTTGTTCTTAGATTTTACTTCAGAACAAGTTTTCATCTTTTCTAGTAATTCAATGGCTGCATCCATAGATATGTATAATAACAGCAATTCTTCCTTCTATTCTCTCAATCCGTTCAACGAAGAGCTTATGCAAGCACTTGAACCTTTTATTCACAGTGCTTCATCCTCTTCGGTTTCTTCGCCTAATTTCACTTTCGATACGTCTTCCGCGCCTATTTACAATCACCCATGTCTTCAAACTCAGTTCTTCGACGAATTTTCACCATCAAAATCGAATCTTTTTACCATGAACAATCAATCCCCAATCGGTTTAACTCAACTGAGCCCTATTCAGATCCAACAAATTCAAGCTCAAATCCAGTTAAACCAGCAGCACCAGCTCATGATTTCTCGTAGTTTACAAGCAAAAAACAACCAAAACCACACCTTTAACGCAAGATCTCAACCCATGAAACTATCAAGTGCCGCCAGTAGTGCAAAGCCTACAAAATTATACAGAGGCGTAAGGCAACGACACTGGGGTAAATGGGTTGCAGAAATCCGTCTACCAAAGAACAGAACTAGGCTTTGGTTGGGTACTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTACGACAGAGCTGCTTACAAGCTCCGAGGCGACTATGCCCGATTGAACTTTCCTGATCTAAAACAAAGCGGCGTTCACCTGCTTGAAAACAGCTTGTTGCATTCTACAGTCGACGCCAAACTCGAAGCTATTTGTAAGAGTTTGGAAGAGGGTTCTAATGGCGTCAAGGTCAATAAGAAAGAGAAGAAATGCAGCAAGGTTGAACAAGAAGTAAAGGTCGTTGAGGCCGTTAGTGACGAGTCAAGTTTGAACATGTTCTCGAATTCGCCTAGTTTGGATTCGAGCAGTAATTTGTTCTCGAGTTCGTCTTCGAATTCGAGCAACGTGAGTTCGCCTTGTCTGGACATTGATAGCTTGGATTTCACAGAGAAGCCATGGGATGAAAGTGAAGCGTTCTTGTTGACGAAATATCCATCTTATGAGATTGATTGGGATGCTTTGTTGGCTTAGGTTTCAGTGTTTTAATATATATATGTAATAATGTAAGTTTTAGTCTAGGGGCTCTTTGCAAATGGAGTTTTTGACATTTGCATAGCCTTTGCTTTTTTCTTTTTTGTTTGTAGGTTGGTTGTAAAACCCAGGGCCTTCGCTGATATTTTTACTTGGCGAGGCTAGGGTGATGTATGTATGTGTTTTATATGTTATATGTCAGTGTATTTGCTTTGAATAAAGTCTAGATTGTTAATTTTTGATAGCTTGTACTAGTCTCGTGAAGAAATTGTTTGGAAAGCACTAATCTGGACAATACTATTGTCAATCGACAAAGGAACTATTGTGTTTTTGACTATAATACTTGGAAAGGACTTTTGTATATTTTGTGGTAGAGGAATAGTAGCCAAACCGCCTTTGGTGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255681.1	2.8e-67	ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q9FJQ2.1	7.8e-46	Ethylene-responsive transcription factor ERF057
trEMBL	A0A5P1F8D9	2.0e-67	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78080.1	44.48	2e-57	219	AtWIND1;RAP2.4;WIND1	related to AP2 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02143	AT1G78080.1	353	159	10	1	335	1	334	44.48	2e-57	219
AfisC8G02143	AT4G39780.1	335	117	12	3	333	2	266	42.99	5e-55	211
AfisC8G02143	AT5G65130.1	320	135	11	17	333	4	273	41.25	3e-51	198

Ortholog group

Species	Genes
Allium cepa	g256275.t1
Allium fistulosum	AfisC8G02143
Allium sativum	Asa1G03062.1
Arabidopsis thaliana	AT2G22200.1; AT4G39780.1; AT5G65130.1
Oryza sativa	LOC_Os02g51670.1; LOC_Os08g31580.1; LOC_Os09g20350.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	148	196	53.3	2.2e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0009416	P	response to light stimulus
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0071214	P	cellular response to abiotic stimulus
GO:0071497	P	cellular response to freezing
GO:2000070	P	regulation of response to water deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network