result

Gene information

Detail information of AfisC8G02338

Location

Gene	Chr	Start	End	Strand
AfisC8G02338	chr8	469554401	469555153	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271158.1	2.4e-33	cell differentiation protein RCD1 homolog, partial
Swissprot	Q92368.1	9.1e-22	Cell differentiation protein rcd1
trEMBL	A0A835RYT5	1.4e-32	CCR4-NOT transcription complex subunit 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20800.1	75.64	1e-31	130		Cell differentiation, Rcd1-like protein

>>>Show top 3 blast result

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC8G02338
Allium sativum	Asa8G04570.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04078.10	Rcd1	Family	1	77	108.9	2.3e-31

Gene Ontology

Accession	Ontology	Name
GO:0000289	P	nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932	C	cytoplasmic mRNA processing body
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007548	P	sex differentiation
GO:0017148	P	negative regulation of translation
GO:0019221	P	cytokine-mediated signaling pathway
GO:0019904	F	protein domain specific binding
GO:0030015	C	CCR4-NOT core complex
GO:0032968	P	positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033147	P	negative regulation of intracellular estrogen receptor signaling pathway
GO:0042803	F	protein homodimerization activity
GO:2000327	P	positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12606	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9	EC:-	RNA degradation	ko03018

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network