result

Gene information

Detail information of AfisC8G02552

Location

Gene	Chr	Start	End	Strand
AfisC8G02552	chr8	504344108	504346440	+

Sequences

CDS

Protein

Gene

>AfisC8G02552
GCGTCAGACGCATGGAAGTCATCCATTTGAGATGGCCCTATCAATAAAAGCAAAAACGGCGTTGCACTAGCGACAACTTTCTTAACTTTCTTCCTCCTTTTTACTCCCTTGCCTACTTTGAAATCTCAAGAAAGCAAACAACTTCGCATTCTCTTTGCTGCCCCCAAACTTAAATTTACCTTTTCCAACATTGTTCATCTTTTCATGTTCAATTTAAATAAACAAACAACATTCCCCTAATCCTATACTTCCAATTTTCATTTAATAACTCAAATTAATGGCGGAAGAAGATTCAAAATCTCGCGAACAACTCAGAAAAAACGACGACAACATTAGCGATGAAAAGTCGAGTTCCGAATCTCCGCCATCAAAAATAGCTCGGATATCTCCAGAAGAATCTTCAGGTAGCTATCCCCTCATCTTCAATTTCATATCAAAACGATTTAATTGCATAATTCAGCATGAACTTCTGAATCAGGGACTGTAACTACGGCAGTCGTTCCGCCACCGCTAAACCTCGGATTAAATCTGACATTAGCGACGGAATCGTCATCGGTGGCAACGGAATCGTCAAAAACAGGATTCACTTTCATGCAGCTGCAAGAATATTACCACCAGGAATTGATATTCAAACACATCTTAGCAGGCATGCCAGTTCCTATCCATCTCGTTTTGCCTATTTGGAAGAGCGTTGCCGCGTCCTATGGGCCTCACCACTACCCTTCTTGTATGTTATTTACATCAATTCTCAAGTTTGAGTTTGTACTGTTATAATCATTGATTGCAGATAGCCTGTAATGATGCTTAGGCGACTAGTTTTCACTAACAAAACTTAGCACAATATCGCTGTTATTTAGTAATAATTAGTCCTTAAATTGCAGCTAGGCACTCTTTTACAACTCAAAATCGGTTAAGTGTATTGTTATGCTATCAACTAGCCTTGGTATATAATTTGAAGAAGGAAGTGACCACTGAAACACATCTAAAAACAAAATGTATGACAAATAAATCTAAACGTAAATTAAGCTGAATTTCTCTATGCATCTACGATATCAGATATTTTTGTCATCCATTGTGCTTTCATATATGTCTCAATGATTGCTCTCTTTGGAGAATTGCATAAATGTGAAGTGTTTAGTGCATGTTGTATTATTAAGAGCCCCTAATATTCATGGAGTTGAATACTAAGGACTGAATAATTAAAGATGCCGAACAGTCATACGCTTATCTCATAGGCGTATGACATCAGACCAATAGACGCATATTATTTAAATGTTTGAAGCTCGGACGCTTATTTAATAAGCAAGCGACTTCTGACTGTTAGGCGCATATTATATAAATGTCTGAAGCTCGGACGCTTATTTAGTAACAGTATATTTTGGCATTTATTTAATAAGCCTCCGACAATTGATTTCTTATTCAATAAACTTCTATTAAAATTAAATAGACATATATGTAGTGGGATTTATTTGATAGACATCTATTAAATAGACATCTAGACCAAGGGTGCAGAATTTCAACCTGAACAAGCTTGATGTTCATGCTGAATATTGAGCTGTTGGAGATACTCTAAGGCACTTGACTATAAATCACATCCTTTGGTGTAGAAATATAGAGTACGGTGGGTCATATTTTATATTTTTATTTGAGTCTGAGTTTAACCGAGAGATGTTTGGGTTATCCATTGTGTTTTTACCTGTGTCTTAATAGTCGTATTTTCTTTTCTAGAATAAAAAAATAAAAATTGTTGCTGAAATATAAAAATGTACGTGTTGGCAGTTGCGGGTCTAGGTCACTTGTGCTATGACTTTAGAAACAGCATGGAGCCAGAGCCAGGAAGATGCAGAAGAACAGATGGTAAGAAGTGGAGGTGTTCAAGAGACGTCGTGCCGGAGCAGAAATACTGCGAGCGACATATGCATAGAGGAAGGAACCGTTCAAGAAAGACTGTGGAATTAACTGTAAGTGATTCTACTCCGAGTGCTACCATTACTATTGATGAAGACAGTAATGATGGTACTGGTAGCAATGATGTTACTATTGCGAGGATTGGGGTATCTCCTATAAGTGTTTTGAGTAATGGCAGCACTACAACTTGTAAAACTAGTGTTGTTTAGCATAGGCTGTGAAATTGAAGGTGTTAAGGGTTTGTCCTCTCTTGTAATCTTTTGCTGCTTTTGTGATTTTTATGTAGAAGGTTTAGTGGTTGGCAAGCTAGGATGTCGAATGTTAATCGGCATTTCCTTTTGTTTGATTGGGAAAACTAGAGTTTTTGAAGAATGTTAATGTTATTTCGTTGGACATGCCTTCAATTACATATTACTTTTGGTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933923.1	1.9e-41	growth-regulating factor 10
Swissprot	Q6AWX7.1	6.8e-36	Transcription activator GRF12
trEMBL	A0A6I9RXI4	1.4e-41	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36400.1	56.90	7e-29	124	AtGRF3;GRF3	growth-regulating factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02552	AT2G36400.1	116	36	3	78	184	77	187	56.90	7e-29	124
AfisC8G02552	AT4G37740.1	112	45	3	75	185	162	271	57.14	1e-28	123
AfisC8G02552	AT3G52910.1	120	36	3	78	184	83	194	52.50	6e-28	120

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	78	111	34.4	1.2e-08
PF08879.7	WRC	Domain	142	184	77.0	6.2e-22

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005509	F	calcium ion binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0006351	P	transcription, DNA-templated
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019222	P	regulation of metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048366	P	leaf development
GO:0048528	P	post-embryonic root development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network