result

Gene information

Detail information of AfisC8G02583

Location

Gene	Chr	Start	End	Strand
AfisC8G02583	chr8	507933174	507934661	-

Sequences

CDS

Protein

Gene

>AfisC8G02583
ATGCGATATCCTCACATGGTCAGTAGCTGTAATACTGGGAGAAAAGCTAAATAATTCAAAGAGCAAAGAGTGAAAGTGATGAGACATGGAAAAGAGAGAGGTGTATATATAATGGGAAGATGGTTGGAATAGAATGGGATACAGTACTCTCTGCATGTCTTCTTCTTTTTTTGCTTTCAATCCACTATTTTTTATTCACATCACATTCTTCTTCTCCATATAACCCACTCCCTGCAATCTCCATATATATATATATATATATACACGCGTTCTGTCTCTTAATTCGACCTACTCAATCCCTCTGCCATGGAATTTGGATTCGGAATTTCTCCTTCTTTCACAGCTCCATCCGTACAGAACCCGTACCTGTACGGCCTTCCATCTACTGACACACTCCGCATAGACGACCTTCTAGACTTCTCCAACAATAACGCCCTTTTCTCTAATTCCACCGTCTCCGATTCTCATATTCTCGGTTCTCAGCCTTCGGGCAATGTCAAAATCGAACCAAATTATTCTTACCATTCTCATTCTCATTCCAACGTTAGCAGTTTCGCGGATGACATTTACATACCGGTACCGGTACCTGAGTAATTTGCTTTTAAGTCCTTGATATTTACTTATTTGCTTACAATGATTCTTTTTGCAGACGGAGGAAGAAGCGGAGTTGGAATGGCTATCGAAGTTCGTGGAGGATTCGTTCACGGACGCGCCTTACCCTTCGAATTATCTCCAGCCAGCAACAATCAGTCACATAAAGCAGGAGTACGGCACCCAGAATTTGACGCCAGATCAGAGGGGGGCGAGAACCAAAAGGATAAAACTGGTAAATCACACTTCGTCGTCGTCGTCGACGTCGTCGTCGTCGTCGTCGGATTTCACAGGGCAGATGGTCGGCAACAGAAGAAGAATCAGAGAGGAGAGCGGCGAAGGAGGGGTGAGACGGTGCACGCACTGCGCGTCGGACAAGACGCCGCAGTGGAGGACGGGGCCGCATGGGCCGAAGACGCTGTGCAATGCTTGTGGGGTAAGGTTCAAATCGGGCCGGTTGGTGCCTGAGTACCGGCCCGCTGCTAGCCCAACTTTTGTGCTCACGCAGCATTCTAATTCGCATCGGAAGGTCATGGAGCTTCGTCGCCAGAAGGAGCAACTTCGTGGAATAATTCGACACGATGGTTGATTTTTATTATTGCATCGAGTAGTTGTTTATTTTGTTACTTTGATTTCGTCGTTGATTTAGTTTGTTAGCTGTTTATCGTTCGCATTGTTGATGTTATGTTTTGCTTAGAAAAAAATATCATTGGGGGGTTTTGAGAGTGTATGAAAATAATAATATTTGAGGGGGTTTAAGGGAAAAAGGCCACGTGTTGTGCTGTTAATTGCAGTATGGTGATTACGATGGCACTGATGTTATATCTTTAATAATTGGCACGTGATATGTGTAGCTTATTGTTTCAGCAAAATATAAATTCCCACTCACATTCATTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919586.1	4.4e-55	GATA transcription factor 2
Swissprot	O49743.1	7.3e-47	GATA transcription factor 4
trEMBL	A0A8K0IL22	7.6e-57	GATA transcription factor 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G45050.1	51.46	1e-46	183	GATA2	GATA transcription factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02583	AT2G45050.1	206	82	5	69	259	48	250	51.46	1e-46	183
AfisC8G02583	AT4G32890.1	260	107	10	28	257	16	266	43.85	3e-46	181
AfisC8G02583	AT3G60530.1	197	87	6	70	263	47	233	49.24	5e-45	177

Ortholog group

Species	Genes
Allium cepa	g79291.t1
Allium fistulosum	AfisC8G02583
Allium sativum
Arabidopsis thaliana	AT2G45050.1; AT3G60530.1
Oryza sativa	LOC_Os10g40810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	190	224	59.9	1.2e-16

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network