result

Gene information

Detail information of AfisC8G02640

Location

Gene	Chr	Start	End	Strand
AfisC8G02640	chr8	517726174	517727538	-

Sequences

CDS

Protein

Gene

>AfisC8G02640
AACAAATTTCATTATATTATTTCATTAACTATTTTTTTGGATGTCTATCACAACTTCAGTGTGCTTGGGTAAGAACAAATATGTCAAATTATTTCAACTTTTTTAAGCTAGCAAATATTAAAGGGATATATGAATCAAAGTCCAAAGCTTAGAGTGAAGGGCAGTTTTCACCTGAAACAGTGGTTGTCGTGACTAAAGATCTGAAGTAGAGCCGACGACCGTCGATCTCATCTCGTCTGAAGAAGTTGACATTGCCTTGCTTGAAGAAGTCGATTAAGAGGCACATCCAAATGCCTATTTAATATACACATGAAGCTACATACGTACATAAAATGAAATGCCTATTAAATAGGAAAAATATCTTCGAATTCAGCCACGGGATTAAAGAGGTGGAGCTTGGAGCTGTCTGAATGCTTAGCAATATAATATCGTCTTTACTTCGTTCTTCATTTGTCTCCCTAATATAAACGCAACCTCACGCTATTGCCCTCCATAATTCAAATTCTATTTCCTCATCTTCTTCCCCAACATACAAATCAAGCAATGTCCACAATACAAGACGATATGGCCGCTCTAGACCGTATATGTTCCCAACTAATTAACCAAGACGACTCTACCTCATTAGATTTGAACGCTCTTCTCGCGCATACATCCGAAACAACAAACAAAAATACTGCTCCAATCAACAAACATCATCCCAATCCATTAACCCTAACACCACCATCCCCCACACCCCCAAAACTCGAATCCACATCAATTTCACACATCATTCACGACGAAGAAAAAGGGCGGAAGTACCGCGGCGTCAGACAACGACCCTGGGGTAAATTTGCGGCTGAGATCCGCGACCCGAACAAACGCGGGTCGCGGGTTTGGTTAGGAACATTCCAAACCGCAATCGAGGGCGCAAGAGCCTATGATGTAGCGGCTTTTAATATGAGAGGGAGGAAGGCGATTTTGAACTTTCCAAATGAGGTCCGATGTTCTGAGCCGCAGCCGTCAGTGACGGAGTTAGGAAAGAGAGGGAGAGAGGAGATGGCTGAGGATTCGGTTAAGCAGGACAGGGTTGAGGAGGAGACGGAGTTGGAGCGTCCGTTAACGCCGTCTAGTTGGACGGCGTTTTTGGATGGGAAGGGTATTTTCAGTTTGCCCTTGCTTTCTCCATTAGGATCATCTTTGATTTGGACTTAATCCGCATGAGTATCTGGTTGTTGTTTGTATAGGGGAATACAATGGACATACGTATTTGTTTCTTCTTTGAAATACCGTTGGTTATGTAAATCGAGGGTTTGTTCTTGTAAGGTGTTATTTATCCCGTAGACCTTTCTGTATGAAAATATATGTGAGATGAGTTTTGGATGACAT

Functional annotation

Database	accession number	e-value	annotation
nr	TQE08626.1	4.1e-35	hypothetical protein C1H46_005802
Swissprot	Q9LW48.1	1.3e-33	NsERF4
trEMBL	A0A8T3AYH4	1.3e-35	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61600.1	44.16	9e-37	149	ERF104	ethylene response factor 104

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02640	AT5G61600.1	231	104	8	1	207	1	230	44.16	9e-37	149
AfisC8G02640	AT5G51190.1	217	91	8	9	210	14	212	42.86	1e-34	143
AfisC8G02640	AT5G47230.1	139	56	3	79	209	150	287	53.24	5e-31	130

Ortholog group

Species	Genes
Allium cepa	g130829.t1; g85388.t1
Allium fistulosum	AfisC8G02640
Allium sativum	Asa1G02589.1; Asa4G02543.1
Arabidopsis thaliana	AT5G51190.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	84	134	45.3	6.8e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009835	P	fruit ripening
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010186	P	positive regulation of cellular defense response
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0051301	P	cell division
GO:0090332	P	stomatal closure
GO:1904277	P	negative regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network