result

Gene information

Detail information of AfisC8G02652

Location

Gene	Chr	Start	End	Strand
AfisC8G02652	chr8	519863382	519865472	+

Sequences

CDS

Protein

Gene

>AfisC8G02652
ATGGAGAAAGATAATGGATTGATGCTGTTTGGTGTTCGTATCGATGCTCCAGTTGCTGAAGAAGAGAATGATATCTTGCGTAAAAGTAAAAGTTTGGGAGATCTTCAAGAAGCAAATCATCAAATTGCGGATAAAGGCTATTTATCCGATGGTGGTTTGATTCAGAGTTCGAGGACTAGAATCAGGCAAGAGAGGAAACGAGGTAAAATAATTTTTAGGATTTCAGTTGTTTTGAATTATTTTATTTCGTTTATTTCTCTAGTTGGATTAGTTAATTTATTTATTGTGTGATGCTGTTTATATGACGTGTTTTGCATGTGCACCAAGTTGGATGAATTTTAAAATTACAATTTGTGCTGTTTTAGTAAATTGTATAAACTTCGTAATAGCTGATGAATCCTTGAGGATGCATACTGTTAAGTTGTCAGAGAACTAAAATTTAATCAGATTTAACCAAGCAATTTGCTCCAAATTTTAATTTTTATGTAATCATATTTGATTGTCTTCGTGGTAGAGAAGATTCAGCTTAAGATTTTTCTTTATAATTTACAAGTATACTGTATATACAAGTACACTGCATACTATTTTTTCGCATATGATTTACAATTATGCAACATGTTTGCTGACTGCATAATTGCATTGCTCACATTCTATTGAGAAGGTCAATACTCTTCAATAGTTTTGCACTTGGTAATTTGGATTATTTGTCTCAGATATTAAGCTATATGTAATTCAAGTTTGTAAGTCCTGTTTAAACCTGAAAAGTTGCCAAGTAGGCCCCCTCCCCCAAATTGAAAAAACCATTAATACTCATGTTTTCGCTGAGTATAGTAATCTTATTGTTAAAATTTTACTTTATACCCTTCACCATTAAAAATCAATCCGTAAATAATTTCACCATAGAAGAAATCACTCCAGCAAAATAATGCAACAAGATAAAATTCAAGTTTTACCTCTTCTGCAAATTGTGAATTTTTAAATTAAAAAAATATCAAAACAACATGAAATTCAAGTTTTACCTCCTTTAATTTTATTAGATTTAAAGACAATTTTGTCCTTGAATTTTTAAAAATTTAAGGGGCTACTCGGCAATATTATGTGTAAATAGAATTAACCTAAATTAAATTAATAAGCCATTTTTTATGGAATGATAAAAATATGAACCTTAAATTTTCCCGATCTAGGAGTACCGTGGAGTGAGGAAGAACACCGAACATTTCTTATTGGGCTTGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATATCAAGAAATTTTGTGAAAACAAGAACTCCAACCCAAGTAGCAAGTCATGCTCAAAAGTACTTCTTACGTCAAAGCAATCAAAACAAAAGGAAGAGAAGATCCAGCCTCTTTGATGTTGGGATCAAGGATAATGTAAGCCTTGCACTTTTTTTGTGTATTTCCCTAGTTGACTTCTAGAATATGGAAGAAATATAACTTGTATATGACTTGATTTCGTAGACTGCCTTTAACTCTCATGAAATGTCCACTGAAACTGCAATGAAGCAGATTGATGCTGTCACTGAAAGGAGCTATAAGGTATCCGTGGAGAATCGTATGATAAAAAACAAACCCTTTATTGGAAATATGATTCAAAATCTGGTTTTAAACAGCAAGTTAAACAGTTCGATGATATATATATGATATTGCAGGTTATTGCACCAAGTAACATTCCTTCACCAGTTACAATGCCTGTATCGGAAGCAGTTCAAACCTTATCAATGTCCATCAATTACCAAAGTACCCAACAGACTGAGAACACTACCCTCTTGGTAATCCATCTGTGCAAAACTTAATATGTTTAATCTTGATCATGACATAGCAGCAGTCCTAATTTCTGAATTATGTACAATTTATAGGGTGGGAACTCAACATTTGATTCTAAGCTCATGACCAGCACAATTTGCCCCACTCTTCTCCAATTATCTTTGCCAATTCCAGTTCAGCAACATGAAAATCATACACCATTCAGTAGCAGTGATTTGGAGCTCAGCATCGCTCCTCCCAAGCCTCATTTGTTGCCCAAGTTACCTGCACAGCCTGTACCAGAAGCAATATGGGTCACCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248378.1	8.0e-60	probable transcription factor At5g61620
Swissprot	Q9FKF9.1	5.6e-34	Myb-related protein At5g61620
trEMBL	D6MKL4	2.9e-56	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61620.1	52.15	1e-37	153		myb-like transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02652	AT5G61620.1	163	62	5	7	154	34	195	52.15	1e-37	153
AfisC8G02652	AT5G47390.1	208	78	6	4	182	20	212	41.35	3e-36	148
AfisC8G02652	AT1G70000.2	132	40	3	7	133	38	162	60.61	7e-33	137

Ortholog group

Species	Genes
Allium cepa	g93526.t1
Allium fistulosum	AfisC8G02652
Allium sativum	Asa1G02587.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	70	114	41.0	1.4e-10

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009723	P	response to ethylene
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0010116	P	positive regulation of abscisic acid biosynthetic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030307	P	positive regulation of cell growth
GO:0048262	P	determination of dorsal/ventral asymmetry
GO:1901001	P	negative regulation of response to salt stress
GO:1901371	P	regulation of leaf morphogenesis
GO:2000469	P	negative regulation of peroxidase activity
GO:1905615

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network